FMO01572.5prime Sequence
1153 bp (1006 high quality bases) assembled on 2008-03-21
> FMO01572.5prime
CAGTCGACATGTTTTCGGTTACTTGTGTGGCGCCCGTAAACATAGCGCTC
ATCAAATATTGGGGAAAGCGGCACGAAGAGCTAATTCTGCCCGTCAATGA
TTCCATTAGCATGACTCTGAGCACCGATGAGCTCTGCGCCAAGACAACAG
TGACTGCATCGGAATCCTTTGAAACGAATCGCATGTGGCTGAATGGGGAG
GAGGTGCCTTTTGAAGAGAGTTCCCGCCTGCAGCGCTGTTTGAATGAAGT
TCATCGATTGGCTGTGGCGAGTGGCTCCCAGAAGGTTCCGCCAACCTGGA
AGCTGCACATCGCATCGGTAAACAATTTCCCCACCGCCGCCGGACTGGCA
TCCAGTGCAGCTGGCTACGCCTGCCTGGTGTACTCCCTGTCCCGACTCTA
CGATATACCGCTGAATGAGGAGCTGACGACGGTGGCGCGGCAAGGAAGTG
GATCGGCATGTCGCAGTCTGTATGGCGGTTTTGTGCAGTGGCATCGCGGA
GCTCTGGATGATGGCAGCGATTCGGTGGCGAGGCAAATAGCTCCATCCGA
CCACTGGCCCAACATGCATGTGCTCATCCTGGTCGTTAACGATGCACGCA
AGAAGACTGCCTCGACAAGGGGCATGCAACAGGCGGTGAAGACGTCTCAG
TTGATCAAACATCGCGTGGATCAAGTGGTTCCCGACCGGATTATCCGATT
GAGGGAGGCCATCGCAAGCCATGACTTTCAGGCATTCGCCGAGATAACGA
TGAATGACTCGAATCAGTTCCATGCCATCGCCCTGGACACCTATCCGCCG
TGTGTCTACATGAACGATGTGTCGCACAGTATCGTGTCCTTCGTTCACGA
TTATAACGAACGAATGGGTAGCTATCATGCCGCGTACACCTTCGATGCTG
GTCCAATGCATGCCTCTATGTCCTGGCGAGCACGTTCCGCATCTCTTGAC
GCTATCCAAAGTGTCCCATGATTTAGCGGATGGTGGCACTACTGCAGCCT
TCCATTCAAAGTGCAGATGCTGAAGCAGCAGTGATTCACTAGATGTTTCA
TGTTAAATGCTTTCGATTATATCCACGAGTCGGGAGAACCAAAGAATTAG
CCGTGATATAGTTATTTGATAAATGACTCTCGCGTGAAGAGCCAGGCTTT
TCT
FMO01572.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:50:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8239-RB | 2055 | CG8239-RB | 85..1236 | 7..1125 | 4855 | 96.4 | Plus |
| CG8239-RA | 1538 | CG8239-RA | 85..1236 | 7..1125 | 4855 | 96.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:50:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15750008..15750757 | 248..989 | 3430 | 98.4 | Plus |
| X | 23542271 | X | 15749830..15749949 | 130..249 | 600 | 100 | Plus |
| X | 23542271 | X | 15749365..15749435 | 61..131 | 355 | 100 | Plus |
| X | 23542271 | X | 15749250..15749304 | 7..61 | 275 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:50:18 has no hits.
FMO01572.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:54:11 Download gff for
FMO01572.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8239-RA | 71..1156 | 1..1067 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:52:27 Download gff for
FMO01572.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8239-RA | 82..1167 | 1..1067 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:45 Download gff for
FMO01572.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8239-RA | 82..1167 | 1..1067 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:45 Download gff for
FMO01572.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15749247..15749303 | 1..60 | 93 | -> | Plus |
| X | 15749365..15749435 | 61..131 | 100 | -> | Plus |
| X | 15749832..15749949 | 132..249 | 100 | -> | Plus |
| X | 15750010..15750849 | 250..1067 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:52:27 Download gff for
FMO01572.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15643280..15643336 | 1..60 | 93 | -> | Plus |
| arm_X | 15643398..15643468 | 61..131 | 100 | -> | Plus |
| arm_X | 15643865..15643982 | 132..249 | 100 | -> | Plus |
| arm_X | 15644043..15644882 | 250..1067 | 96 | | Plus |
