FMO01573.5prime Sequence
1193 bp (980 high quality bases) assembled on 2008-03-21
> FMO01573.5prime
CAGTCGACATGTTGGACGTGATCCAACCCAGCAGCAACCTCCCGACCAGC
GAAAGCACCGATATTGTGGTGGTCCGAGCCAGACCAAAGAAGGTGTTCAA
GCCAAAGGCGCGCATCAATCGGATTCCCCAGGAGCTGCTCGATGATCCAC
TGCTGCAGCAGGCCATCGACCGTCTGCCCTCGAACTACAACTTCGAGATG
CACAAGACGATTTGGCGCATACGGGAGATGAAGGCCAAGCGTGTGGCCCT
GCAACTGCCGGAGGGCCTGCTGATGTACGCCATGGTTATCAGCGACATTG
TGGAGCGATTCACCAGCGCAGATACTGTGATAATGGGCGATGTGACTTAC
GGAGCTTGCTGCGTGGACGACTACACTGCCAAGGCGTTGGGAGCTGATCT
GCTGGTCCACTACGGCCACAGCTGCCTCATTCCCGTAGATCAGACGTGTG
GCATCAAGGTGCTGTACATTTTTGTAGACATCAAAATCGATCCGCTGCAC
TTCCTGGACTCTGTATAGCTGAACTTCCGCCCGGAAGTGGGCCAAATAGC
TTTAGTAAGCACAATACAGTTCGTGACAACGCTGCAAGCTGCATCTACTG
AGCTAAAGGCAGCCGGCTATGATGTGATAGTACCACAGGCCAAGCCACTT
AGTCCTGGAGAGATTCTTGGGTGCACTTCGCCTCAGCTGCCAGAGACAAC
GAAGATGATAATATATTTGGGTGACGGGCGTTTTCATCTAGAATCCGCAA
TGATAGCAAACCCGTTGCTAAAGGGCTTACAAGTACGATCCCTATGAAAA
GAAGTTCACCACAGAGCAGTACGATCACTCTGGCGATGCAGATCTGCGCC
TGGACGCTGTTCAGCGGGCTAAGAGGCCCGCCGCATTGGCATCATACTTG
GAACATTCGGAAGACAAGGCAGTTCAGAGTGCATCGGTTTTGGAGAGCGA
CTTCATGCCAAGGGTATTGAAACTACACATTATTGCTGTCGGAGATCTTC
CCACAGAAATTGCTCTTTTCGCCGACATCGACGCTTTGTGGAGATTGCTT
GTTCGCGACTTTCATCGACTGGGGATCCGCATTTAGCACGTTGCTGTATT
CTTTACGGCCTGTTCCTGATTTGGCCAGTACGAGTGAACCGCCACATCTG
TTGCGGCACAAGCATTCTCTGATGACTCTACTACGCTAACGTA
FMO01573.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:38:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11652-RC | 1720 | CG11652-RC | 88..1174 | 8..1087 | 5095 | 98.5 | Plus |
| CG11652-RB | 1784 | CG11652-RB | 152..1238 | 8..1087 | 5095 | 98.5 | Plus |
| CG11652-RA | 1725 | CG11652-RA | 93..1179 | 8..1087 | 5095 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:38:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11694809..11695575 | 774..8 | 3820 | 99.9 | Minus |
| 3L | 28110227 | 3L | 11694425..11694746 | 1087..774 | 1055 | 95.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:38:50 has no hits.
FMO01573.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:54:22 Download gff for
FMO01573.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11652-RB | 91..1202 | 1..1103 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:48:32 Download gff for
FMO01573.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11652-RA | 86..1198 | 1..1103 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:14:28 Download gff for
FMO01573.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11652-RA | 86..1198 | 1..1103 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:14:28 Download gff for
FMO01573.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11694427..11694745 | 774..1085 | 95 | <- | Minus |
| 3L | 11694810..11695581 | 1..773 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:48:32 Download gff for
FMO01573.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11687527..11687845 | 774..1085 | 95 | <- | Minus |
| arm_3L | 11687910..11688681 | 1..773 | 99 | | Minus |
