FMO01575.5prime Sequence
1235 bp (1027 high quality bases) assembled on 2008-03-21
> FMO01575.5prime
ATAAAACGAAGTTATCAGTCGACATGAATGGCTATACAAATAATTGTATA
TCGATATGTGCAATTTTATTAATAGGCGTATCTTCACCCGCTCCTCAGCA
GAACATTAACGCACAGAAAAACATTGAGGAAATATTTAATACTAATAGTA
ATCTTTCAGCGCAAAAAGAATCCGGAATCGGATTAGTGATTACCCCCGAT
CCTATGGAAACTATAAGTCAACAGTCAAATTTTACTTCAACTAGTGGCAA
AACTGCAACTTGTAATTGCGTCCCATATTATAAATGTGATCCATCAACAA
AGAGTTTCACTGAAGATGGCTCTTTTGACGGATTTGGTGTTATAGATATT
CGATTTAACGACGATGATCCGATATGCCCGGCATCTGTAGACGTATGTTG
TGATGCTAATAGGACGCTTAATAAGACGTTGAATCCGACACCCTTGGATC
AAAGGCCAAACCAGCCAAGAGGCTGTGGTGTTCGCAATACAGGTGGATTG
GATTTTACTCTTTCCGGAGTATCGCAAAATGAAGCGGGTTTTGGCGAGTT
TCCATGGACGGTAGCATTATTGCATTCTGGAAATTTAAGCTATTTCTGTG
CTGGATCTCTTATACATAAACAGGTGGTTTTGACCGCTGCGCACTGTGTT
GAGTCGCTTAGAACAGGATCGTTTACTGTCCGAGCTGGAGAGTGGGATAC
ACAAACAATGAAAGAGCGTCTACCCTATCAAGAAAGATCGGTTCAAACTG
TTATATTGCACCCAGATTATAACAGAAGAAGCATAGCTTATGATTTCGCA
CTTGTAATTCTAAGTCAGCCGGTTACTTTGGATGATCACATTAATGTTAT
ATGTTTACCTCAACAAGATGATATTCCGCAGCCCGGTAACACATGTTTTC
CACCGGCTGGGGAAAGATGCTTTTGGTTCTTTGGGCAATATAGCTCATAA
TGAACGTGTTCCATTGCCCATTGTGAGTTAACAGTGTCAGACACGACTTA
GAGGCACTCGACTTGAACAAAGTTGCATGATAGTCATTCATATGCGCGGG
TGACAGCGTGCAATGATACTGTCAGGGGATGGCGGGGCTCACTACCTTGT
CTACGGGAAGTACCGGATCCCGATACACGACTGCTATTTGCCTGGGCATC
GATGTTATGAGTAAGTCGCACCTAGGCCACGTACTTGTCAGAGGTGAATG
ACACCAAAGTTACAATGACTCTGGAAAGGTGTGTA
FMO01575.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:11:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG40160-RH | 4869 | CG40160-RH | 85..1193 | 24..1113 | 5005 | 97.8 | Plus |
| CG40160-RG | 1478 | CG40160-RG | 121..1229 | 24..1113 | 5005 | 97.8 | Plus |
| CG40160-RF | 1422 | CG40160-RF | 65..1173 | 24..1113 | 5005 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:11:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 26224649..26225648 | 24..1015 | 4585 | 99.1 | Plus |
| 2R | 25286936 | 2R | 3469206..3470199 | 1010..27 | 3850 | 94.6 | Minus |
| 2R | 25286936 | 2R | 3334862..3335566 | 27..728 | 2945 | 95.2 | Plus |
| 2R | 25286936 | 2R | 3335571..3335790 | 760..974 | 810 | 95.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:11:05 has no hits.
FMO01575.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:54:25 Download gff for
FMO01575.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG40160-RB | 86..1194 | 24..1113 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:53:25 Download gff for
FMO01575.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG40160-RF | 58..1173 | 16..1113 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:07:23 Download gff for
FMO01575.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG40160-RF | 58..1173 | 16..1113 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:07:23 Download gff for
FMO01575.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 26224649..26225732 | 24..1090 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:53:25 Download gff for
FMO01575.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3LHet | 1571197..1572282 | 22..1090 | 98 | == | Plus |
