FMO01576.5prime Sequence
1210 bp (1007 high quality bases) assembled on 2008-03-21
> FMO01576.5prime
AAAACAAAGTTATCAGTCGACATGGTGTTCAAGTGCCAGGAGGACAGTTT
CCTGAAGGAGTTCAAGACAAAAATCGTTAGCAGCGAGTTTGCCACCTTGG
ATTGGACAGATCCCAGTGGAAAGGTGGAGAAACTCAAGGGCTTCAATGTG
ATCTGCGAGGACACGATACTATTTCCCGAGGGCGGTGGTCAGCCCTGCGA
TTACGGAACCTTAGGCGGATTTCCAGTTAAGAATGTCCAGAGAAAAGGCT
CTACGGCTGTACATTTTGTGGAATCCCCAACGAGTTTCGAGCAGGATGCC
GAAGTCCTTCTGACACTAGACTACCAAAGAAGACTGGATCACATGCAACA
GCACTCAGGACAGCACCTGATCACCGCCCTGTTCGACAGGGAGTTCAAGT
ACGATACCACCTCGTGGTCCCTGGGATCCACTGTCTCTTACATTCAATTA
AGTACGCCTCATTTGATAAGTCGCGAGTCATTGGACCTCATCGAACGTCA
GGCCAACGATCTGATTCGCGAGGGCCGTGAAGTTACGGTGCTTCTGGTGG
ATCCCGAGGTGGCGCAAGAGTTCCAGGATGCCAGAGCTCCCAGGGGATTG
CCCAAGGATCACGAGGGTCTGGCCAGGGTGGTGCGAATCGAGGGCATTGA
GAGCAACATGTGCTGCGGCACCCACGTCACGAATCTCTCTCAACTGCAGT
GCATTAAGCTGCTCTACGCCGAGAAGGTGAAGGCGAATGTTCTGGTGCAC
TTTGTCGTCGGCGAGAGGGTGCTCGTAAAGCTTGCGAGGTCTTTCAGCGC
GAACAGCAGCTAACACAGGCTTTAAAGGTGGCCCCGGTCAGCACTTGGAG
CTTGTCCAGAAGCTACAGCAAATGTGAAGGGCAGTCGAAAGTACTTCCAG
CAGCTGCTTAAACGTTACGCCACCGGCCGAAGCCGAGCGTCTCTGCGATT
TGCCCAAAAGGATCGTTCGAAATATTTCTCCTCTCCATCGACGCGATGCA
TCGAGGTGACTTCATCAACCATTCTTGCGGCGCTCGAAGGATCTCTACTT
TCTCACTGTTCCGAGAGCGTTTTTGCTGCAGCATGCAAGGATCTGGTGCT
GCCGGAATCAGATTGTCGGAACTCGTCCCAATTAGATTCTCGAGCCAGAA
CGCTAGGTATCAGGAAATCACACTGCTGACTCGATTCCAAGACTCTGTGG
GAAGCGTAGA
FMO01576.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:06:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10802-RA | 1472 | CG10802-RA | 81..1179 | 22..1102 | 4955 | 97.8 | Plus |
| CG10802-RB | 1400 | CG10802-RB | 458..1107 | 471..1102 | 2710 | 96.3 | Plus |
| CG10802-RB | 1400 | CG10802-RB | 81..457 | 22..398 | 1885 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:06:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 3483144..3483913 | 59..827 | 3800 | 99.9 | Plus |
| X | 23542271 | X | 3483970..3484177 | 826..1030 | 670 | 95.7 | Plus |
| X | 23542271 | X | 3483045..3483083 | 22..60 | 195 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:06:58 has no hits.
FMO01576.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:54:27 Download gff for
FMO01576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10802-RA | 77..1197 | 22..1119 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:52:50 Download gff for
FMO01576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10802-RA | 81..1201 | 22..1119 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:46 Download gff for
FMO01576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10802-RA | 81..1201 | 22..1119 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:46 Download gff for
FMO01576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 3483040..3483083 | 19..60 | 93 | -> | Plus |
| X | 3483146..3483912 | 61..825 | 99 | -> | Plus |
| X | 3483970..3484284 | 826..1119 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:52:50 Download gff for
FMO01576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 3377179..3377945 | 61..825 | 99 | -> | Plus |
| arm_X | 3377073..3377116 | 19..60 | 93 | -> | Plus |
| arm_X | 3378003..3378317 | 826..1119 | 91 | | Plus |
