FMO01577.5prime Sequence
1259 bp (1046 high quality bases) assembled on 2008-03-21
> FMO01577.5prime
CAGTCGACATGGGTAAGCCGAAGAAGGCCAACGTGGCAACGATTAAAAAT
GTGAATCTGGAGAAGCAGATCACCGAGGGCAGGGTGGCGAAAAACAAGAA
CAAGGATAAAGTCAAACTGCGGGCCGAGGAATCGGCGAACATCGATGCCA
GAAGTAGTCAAAAGATCCTGGCCGCGGCCAAGCTGCAGCAGTTGGAGCTG
GACGAAGAGAACTTTCCCAGTCTGGTGACCGTCAAGAAAGTCAACTTCAG
TTTGAATGATGGCCATGTCAAGGAGGATGAAGAGGTCAACGAGACTGACC
TCATGGCCGACCTGGACATGGACGAAGACGATGTGGCCGCGTTCGAGCGC
TTCCAGCAGCCAGCACAGGAGGGCAAGCGTACGTTGCACCTGTCCAAGAT
GATCATGCAGAAGATCCAGGAGAAGGAGGCCGACATACACACTAAGATCT
CTGACGAGGGCTCACTAAAGATCGAGGAAATCGACCCGAAAGTGAAGGAG
ATGTACGAGGGCGTGCGCGATGTGTTGAAACGCTATCGCAGTGGCAAGAT
CCCTAAGGCCTTCAAGATCATACCCAAGCTGCGCAATTGGGAGCAGATCT
TGTTCATCACTGAGCCCCATAATTGGAGCGCTGCCGCCATGTTCCAAGGC
ACCCGCATCTTCTGCTCGGTGCTGTCGCAGGCAATGGCCCAGAGGTTCTA
TAACCTGGTGCTCCTGCCACGAGTTCGTGATGATCTCTGCGAATATAAGA
AGCTCAATATGCATCTGTACAATGCACTGAAGAGGGCTCTCTTCAAGCCG
GCTGCCTTCATGAAGGGAATCATTCTGCCGCTGCTCGAGGGCGGCGATTG
CACATTGCGCGAGGCCATCATTTTCGGCAGTGTGGTGGCCCGCAGCTCTA
TTCCCGTCCTGCACTCCTCCGCCTGCCTGCTGAAGATCTGTGAGATGGCC
TATTCGGGAGCTAACTCATATTCATCCGTTACTTTCTGGACAAGCGGTAT
GCCTCTGCCTTATCGCGTGTGATGCCGCAGTCTTTCATTTTCTAGATCAG
AACGACAAGGCGTGGAGTTACAGTGCTATGGCACCGAGCCTGCTCACCTT
GGCCAACGAAACAAGAAACGAATTTTCCCTCCGGACAGCGGGAAGGCACT
GTCTCGCCACCCTGCTCTAAAAGAAAAGTCATTTCCAGACTTACCTCGTG
ATGTGAAAAGAGAGACTTCAGAGCGCGCGCCATTTGTCTCGCAGCTAGTA
GTGTGTCAC
FMO01577.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:53:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bys-RA | 1518 | CG1430-RA | 113..1292 | 9..1189 | 5280 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:53:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7902367..7903157 | 256..1044 | 3765 | 99.2 | Plus |
| X | 23542271 | X | 7901992..7902120 | 9..137 | 645 | 100 | Plus |
| X | 23542271 | X | 7902184..7902302 | 137..255 | 595 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:53:02 has no hits.
FMO01577.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:54:28 Download gff for
FMO01577.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1430-RA | 83..1208 | 1..1121 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:51 Download gff for
FMO01577.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bys-RA | 105..1230 | 1..1121 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:43:17 Download gff for
FMO01577.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bys-RA | 105..1230 | 1..1121 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:43:17 Download gff for
FMO01577.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7901984..7902120 | 1..137 | 97 | -> | Plus |
| X | 7902185..7902302 | 138..255 | 100 | -> | Plus |
| X | 7902367..7903159 | 256..1045 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:51 Download gff for
FMO01577.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7796017..7796153 | 1..137 | 97 | -> | Plus |
| arm_X | 7796218..7796335 | 138..255 | 100 | -> | Plus |
| arm_X | 7796400..7797192 | 256..1045 | 99 | -> | Plus |
