FMO01579.5prime Sequence
1228 bp (1031 high quality bases) assembled on 2008-03-21
> FMO01579.5prime
CAGTCGACATGTTGAAATCCAGTCAAGATCGCAAGCTAAAGCACCTTTTC
GATGGCGGTGATTGGAATGTATACGCTCCGAACATCCTAAATCTCGGAGT
GGGTGCTCCAGGACCAGATATCCTGACCGCCAACTGTGATAGCTTCCGGA
CGGCCACAGATCATTGTCTGGAACGCGAAAAGCGGGAAAACCAGTCGCTA
ATTTTCCAATATGGACCAACAAGTGGAACATTCGAGGTGCGACGCGAGAT
CTCCACCTATTTCACCGAAATGTTCAAAAGTCCCGTCAATTGTGAGGATT
TGATAATAACCACAGGAGCATCCCATGGCCTTCACATACTTTTGTCCACA
ATGTTGGACTTTGAGGGTTTCGTATTCGTCGATGAGTACACCTATATGAT
TGCTTTAGATAGTATAAAACACTTTAGCACTGTGACCATAGTTCCCGTAA
AGCTCAACGATGATGGCGTGGATCTGAAGGATCTTGAAGAGAAGGTATCA
AAACGACGATTTCAATCGAAGAAGAAAGAGTTCTGGGGAATCTACTATAC
GATACCAACGTATCATAATCCCACGGGGATTCTATTCTCGCCGGAGGTCT
GTCGTGGAATTGTGCAACTTGCTAGGAATTATGATTTCCTTGTCGTCTGC
GATGATGTTTATAATATTCTCAACTATGGCGAAACGCCCACACACAGCCG
TCTGTTGTCCTATGATGACAGAAATGATGCCAACTTCGCAGACATGTTAT
CTCCAATGGAAGTTTCTCCAAGATTCTGGGACCGGGAGTTCGCCTGGGTT
GGCTTGAGGTTCCTCCGCGCCTGAACCAATTTTAGATGGAAGTGGTTTTG
CACTAGTGGTGGATGCTTCACAACTACACATCAGGATGTGGGCAGTCTAT
TTGAGCTTAAGCTAGCCCAGAAGCAATTTCTGAGTCCTATGAGCTATAGG
AGCGCATGCTGGCCCCACGCAAGTGCTTCGAGATGAGTTGCCCGACTGCT
GCAGTGGTCAGCCCCACGGCGGATACTTCATTGGGTGCCGGATACCGGAT
CGATGGACTGCCGGGAGTTCTCAGGTACTGCATGGAGAATCCCAGGATCT
CACTTTAAGTAGGACCCGCCTCCCTGGCGATGTCAGGTGCCAACAGATCT
CCGCCGTCCATCGCCTCATCCCGAGTCAGTTGGGTAGTGGCTTAGAAAAC
TTGGCAACGCAGTATGAGATATATATTC
FMO01579.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6321-RA | 1594 | CG6321-RA | 94..1275 | 7..1166 | 5105 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11059828..11060350 | 1100..594 | 1760 | 94.5 | Minus |
| 3L | 28110227 | 3L | 11060420..11060722 | 594..292 | 1515 | 100 | Minus |
| 3L | 28110227 | 3L | 11060967..11061131 | 171..7 | 825 | 100 | Minus |
| 3L | 28110227 | 3L | 11060786..11060908 | 292..170 | 615 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:12:53 has no hits.
FMO01579.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:54:30 Download gff for
FMO01579.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6321-RA | 83..1212 | 1..1114 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:44:49 Download gff for
FMO01579.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6321-RA | 88..1217 | 1..1114 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:55 Download gff for
FMO01579.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6321-RA | 88..1217 | 1..1114 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:55 Download gff for
FMO01579.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11059837..11060349 | 595..1091 | 96 | <- | Minus |
| 3L | 11060420..11060721 | 293..594 | 100 | <- | Minus |
| 3L | 11060786..11060907 | 171..292 | 100 | <- | Minus |
| 3L | 11060968..11061137 | 1..170 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:49 Download gff for
FMO01579.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11052937..11053449 | 595..1091 | 96 | <- | Minus |
| arm_3L | 11053520..11053821 | 293..594 | 100 | <- | Minus |
| arm_3L | 11053886..11054007 | 171..292 | 100 | <- | Minus |
| arm_3L | 11054068..11054237 | 1..170 | 97 | | Minus |
