FMO01580.5prime Sequence
884 bp (884 high quality bases) assembled on 2008-03-21
> FMO01580.5prime
AGAAACAAAGTTATCAGTCGACATGGCCTTGATAAAACTAGCAAGGCAAC
TGGGCCTGATCGATACCATATACGTCGACGGAGCTCGCCCAGATCCAAAT
AACGATCCCGAGGAGTCGTTCAACGAGGACGAAGTCACAGAGGCCAACTC
AGTGCCCGCCAAAAGCAAGAAGTCAAGGAAGTCCAAGCGTCTAGCCATGC
AACCCTACTCATATGTGATTGCCGTGGACTTTGAGGCAACCTGCTGGGAA
AAGCAGGCTCCGCCAGAGTGGCGAGAAGCGGAGATAATTGAATTCCCAGC
AGTGCTTGTTAACCTTAAGACAGGAAAGATCGAGGCGGAATTCCACCAGT
ACATCCTTCCCTTCGAGTCGCCGCGCTTGAGCGCCTACTGCACGGAGCTG
ACGGGCATCCAGCAGAAGACTGTGGACAGCGGAATGCCGCTGCGGACGGC
GATCGTGATGTTTAACGAATGGCTGCGCAATGAGATGCGAGCCCGCAACC
TTACCTTGCCCAAGATGAACAAGTCAAACATACTGGGCAACTGTGCATTC
GTCACCTGGACGGACTGGGACTTCGGCATCTGCTTGGCGAAGGAGTGCAG
CCGCAAAGGGATACGCAAGCCGGCCTACTTTAATCAGTGGATCGACGTGC
GGGCCATTTATCGGTCGTGGTACAAAGTACCGTCCGTGCAACTTCACGGA
TGCCCTGTCGCACGTGGGTCTGGCATTCGAGGGCAAGGCCCACTCGGGGA
TCGACGATGCCAAGAATCTGGGCGCACTCATGTGCAAGATGGTGCGCGAC
GGGGCGCTATTCTCGATCACCAAAGATCTGACGCCATATCAGCAGCTTAA
TCCCAGGTTCGTGGTGGCAAGCTTTCTAGACCAT
FMO01580.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Snp-RD | 1899 | CG44248-RD | 610..1449 | 23..863 | 4180 | 99.9 | Plus |
| Snp-RF | 1419 | CG44248-RF | 151..969 | 44..863 | 4075 | 99.9 | Plus |
| Snp-RG | 1667 | CG44248-RG | 401..1217 | 46..863 | 4065 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22068735..22069307 | 290..863 | 2820 | 99.8 | Plus |
| 2R | 25286936 | 2R | 22068425..22068671 | 44..290 | 1235 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:17:01 has no hits.
FMO01580.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:54:32 Download gff for
FMO01580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6393-RA | 602..1449 | 15..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:27:45 Download gff for
FMO01580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snp-RD | 605..1452 | 15..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:36 Download gff for
FMO01580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snp-RD | 605..1452 | 15..866 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:36 Download gff for
FMO01580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22068427..22068671 | 46..290 | 100 | -> | Plus |
| 2R | 22068736..22069310 | 291..866 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:27:45 Download gff for
FMO01580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17955932..17956176 | 46..290 | 100 | -> | Plus |
| arm_2R | 17956241..17956815 | 291..866 | 99 | | Plus |
