FMO01582.5prime Sequence
1244 bp (1022 high quality bases) assembled on 2008-03-21
> FMO01582.5prime
ATAATACGAAGTTATCAGTCGACATGGCGTATGGCTGGAACGGATGCGGA
ATGGGCGTGCAGGTGAACGGAAGCAACGGCGCCATAGGTTTATCCTCGAA
GTATTCTCGCAACACGGAGCTGCGACGCGTTGAGGACAATGACATTTACC
GGCTTGCCAAAATACTAGATGAGAACTCATGCTGGCGCAAATTGATGTCG
ATCATACCCAAGGGCATGGATGTGCAGGCCTGCAGCGGAGCCGGATGCTT
GAATTTTCCGGCGGAAATCAAAAAGGGATTTAAGTACACTGCGCAGGACG
TGTTCCAGATTGACGAGGCTGCAAACCGACTACCGCCGGACCAAAGCAAG
TCGCAGATGATGATCGACGAGTGGAAGACCTCTGGCAAGCTCAACGAGCG
GCCCACGGTTGGGGTATTGCTCCAACTTCTGGTGCAGGCAGAGCTCTTCA
GTGCGGCAGACTTTGTGGCACTAGACTTCCTAAATGAGTCCACCCCTGCC
CGGCCTGTTGACGGTCCCGGTGCGCTCATAAGCCTTGAGCTGCTGGAAGA
GGAAATGGAAGTGGACAACGAGGGGCTGAGCCTCAAATACCAGTCAAGCA
CTGCCACTCTTGGGGCAGACGCTCAAGGTAGCGTTGGCCTGAACCTGGAC
AACTTTGAAAAAGACATTGTGAGGCGGGACAAGAGTGTGCCCCAGCCGTC
AGGAAACACCCCTCCCATAGCGCCACCTCGACGACAGCAAAGGAGTACTA
CTAACTCCAACTTTGCAACATTGACAGGCACCGGAACTACGTCGACGACC
ATCCCGAATGTGCCCAATCTGACAATTCTCAATCCCAGCGAACAAATTCA
GGAGCCAGTGCTGCAGCCACGACCGATGAACATCCCCGATCTGTCTATAC
TCATTTCGACTCTGGTGATTTGCGGGCACTGTGTCGGACACCCAAGCAAC
AGACTAGCTCACGGATCCGCCTAACATTCCGCGATCACTCTTTTATTGAT
ATCCTGGAGATGTAACCTCTCGACAATCACGCCTCCAGCGAAGCTTCACG
GCTACACATCACGGGCGAGCTCAACAACTTGCCATGATAGCGCCTTGAAT
ATAGTAAGGCGCAGGGAGAACCTTGCGGTCCTTGAGAGCGAACACCTCCG
GCAGCTGAGCCAAGTGTGCCAATGATACCATGTTGGGAGAGTGGAAGGAA
GATACCGATGGTCCTCTCTGTGTCAAATCTGGTAGAATACTCTC
FMO01582.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:32:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tub-RC | 2006 | CG10520-RC | 188..1347 | 23..1164 | 5075 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:32:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4387929..4388392 | 23..486 | 2320 | 100 | Plus |
| 3R | 32079331 | 3R | 4388458..4389004 | 486..1024 | 2305 | 98.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:32:32 has no hits.
FMO01582.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:52:48 Download gff for
FMO01582.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10520-RB | 518..1680 | 16..1164 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:46:33 Download gff for
FMO01582.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tub-RC | 185..1347 | 16..1164 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:11:23 Download gff for
FMO01582.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tub-RC | 185..1347 | 16..1164 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:11:23 Download gff for
FMO01582.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4387926..4388396 | 16..488 | 98 | -> | Plus |
| 3R | 4388461..4389154 | 489..1164 | 95 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:46:33 Download gff for
FMO01582.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 213648..214118 | 16..488 | 98 | -> | Plus |
| arm_3R | 214183..214876 | 489..1164 | 95 | == | Plus |
