FMO01584.5prime Sequence
1180 bp (1032 high quality bases) assembled on 2008-03-21
> FMO01584.5prime
CAGTCGACATGCGCATGCGCGGACGAAGATTGCTTCCGATTATTTTGTCG
CTTCTTTTGATCGTCCTACTGAGTCTCTGTTACTTTTCGAATCACTTGAG
GGATTCAAGCCAGTCCCGCAAAAACGGTTTCTTGCTGCACTTACCACTCG
AAACGAAGAGGAATCCATCTAACCCTAATACTCCGTTAAGTAATCTTCTG
AATCTCACGGACTTCCACTACTTGCTGGCCAGTAATGTGTGTCGAAAGGC
AAAAAGAGAACTCTTAGCCGTTTTAATAGTTACTTCGTATGCCGGACACG
ATGCCTTGCGATCAGCTCACCGACAGGCAATTCCCCAAAGCAAACTGGAA
GAAATGGGCCTGCGAAGAGTTTTTCTCTTGGCAGCCCTGCCTTCAAGAGA
GCATTTTATAAGCCAGGATCAACTGGCCAGCGAACAGAATCGTTTCGGGG
ACCTTCTCCAGGGGAATTTCATCGAGGACTATCGCAATCTGAGCTACAAA
CACGTAATGGGATTAAAGTGGGTCTCTGAGGAGTGCAAAAAGCAGGCCAA
GTTTATCATTAAACTGGATGATGACATCATTTACGATGTGTTTCATCTGC
GCAGGTATTTAGAGACCCTCGAGGTGCGCGAACCTGGACTGGCCACATCA
AGTACTTTGTTATCTGGCTACGTACTGGATGCCAAGCCCCCCATTCGCCT
TCGAGCCAATAAGTGGTACGTTAGCAAAAAGGAGTATCCTCAGGCTTTAT
ATCCCGCCTATTTGTCGGGCTGGCTTTACGTGACCAACGTGCCAACAGCC
GAGAGGATTGTGGCGGAGGCGGAGAGGATGTCATTTTTTTGGATCGATGA
CACCTGGTTGACTGGAGTAGTAAGGACTCGTTTGGGTATTCCCCTTGAGC
GTCACAACGACTGGTTTTCTGCCATGCAGAGTTCATCGACTGCTGTGTGC
GAGATCTCAAGAAGCACAACTATGATGCGAGTACTCCGTGGGACCCAATG
GCGGTGACGACCGACTACTGGTGAATTCTGCATACGGTGGAGAAATGGCT
ACTTTGATGAATGCGTCAACGGCCGGGTGGTAGTCGCCTCAAGAGACCGG
TTAGCGGCGGCCAATCTCGACCTTAAACTGGTTCCTGTGAAATAAGCGGT
GCGACTCAGAGCCAGAGCCTTCTTCTGGAC
FMO01584.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:59:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3038-RA | 1731 | CG3038-RA | 187..1349 | 9..1159 | 5265 | 97.6 | Plus |
| CG3038-RB | 1630 | CG3038-RB | 178..1248 | 101..1159 | 4805 | 97.4 | Plus |
| CG3038-RC | 1751 | CG3038-RC | 187..697 | 9..519 | 2555 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:59:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 244494..245350 | 1114..264 | 3775 | 97.9 | Minus |
| X | 23542271 | X | 245412..245670 | 267..9 | 1295 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:59:51 has no hits.
FMO01584.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:52:49 Download gff for
FMO01584.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3038-RA | 158..1298 | 2..1133 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:33 Download gff for
FMO01584.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3038-RA | 181..1321 | 2..1133 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:14 Download gff for
FMO01584.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3038-RA | 181..1321 | 2..1133 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:14 Download gff for
FMO01584.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 244471..245346 | 268..1133 | 97 | <- | Minus |
| X | 245412..245676 | 2..267 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:33 Download gff for
FMO01584.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 138504..139379 | 268..1133 | 97 | <- | Minus |
| arm_X | 139445..139709 | 2..267 | 98 | | Minus |
