FMO01585.5prime Sequence
1162 bp (999 high quality bases) assembled on 2008-03-21
> FMO01585.5prime
CAGTCGACATGTCCCATCCGTCTGACCATGTGCTGCGTCCCAAGGAAAAT
GCTCCGCACAGAATGCCAGAAAAATCAGCTGCAGTGCACAATATGCAAAA
GAACTTGCTATTGGGAAAGAAGCCCAACAGCGAGAATATGGCTCCAGCTA
GCAAACCCTTGCCAGGATCCTCTGGCGCTTTGATCAGGAAGCCAGGCCTA
GGAGGCTCCAATTCCATAGCTTCCTCCGAAGGAAACAACTTCCAAAAACC
CATGGTGCCGTCCGTGAAGAAGACCACATCAGAGTTTGCTGCTCCGGCTC
CAGTAGCACCTATCAAGAAGCCTGAGTCACTTTCCAAGCAGAAACCCACT
GCTGCGAGCTCTGAATCCTCCAAGGAACTGGGTGCGGCCAGCAGCTCCGC
TGAAAAAGAGAAAACCAAGACTGAAACCCAGCCCCAGAAGCCGAAGAAGA
CCTGGGAGCTCAACAACTTTGATATTGGTCGCCTGCTGGGACGGGGCAAG
TTTGGCAACGTTTATTTGGCGCGGGAAAAGGAATCCCAGTTCGTGGTGGC
CCTAAAAGTGCTCTTTAAGCGCCAGATTGGCGAGTCCAATGTGGAGCACC
AGGTGCGTCGTGAGATCGAGATACAATCGCACCTACGTCATCCGCATATC
CTGCGTCTGTATGCCTACTTTCACGACGACGTGCGCATATATCTGATCTT
GGAGTATGCGCCACAAGGAACGCTTTTCAACGCCTTGCAGGCACAGCCGA
TGAAACGTTTCGATGACGCCAGTCGGCCACCTATATTCAGGCGTTGTGCT
CGGCGCTGCTCTATCTGCATGAGCGGGACATCATACACAGGGACATCAAG
CCGGAGAACTTGCTGCTCGGGACAAGGGCGTCCTGAAGATCGCCGACTTC
GGTTGGTCCGTGCACGAGCCGAACTCCATGCGCATGACACTGTGCGGCAC
TGTCGACTACTTGCCACCCGGAAATGGTTCAGGCAAGCCGCCACACGAAA
CGTGATCTATGGGAGCTGGGTTTGCTCTGCTTTGGAGCTGCTAGTGGCCA
CGCCTCCCTTCTACTCGAAGACTAGACAGACCTACAGAAGAATTCTCAAG
TGAACTACAACCTGCGGAGCCAATTCCCAGGAAGCATCTCCATCTTAAAT
TTTCAAGGCGTC
FMO01585.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:00:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aurA-RA | 1577 | CG3068-RA | 168..1313 | 8..1145 | 5135 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:59:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11963832..11964483 | 423..1071 | 2740 | 97.1 | Plus |
| 3R | 32079331 | 3R | 11963468..11963770 | 121..423 | 1515 | 100 | Plus |
| 3R | 32079331 | 3R | 11963291..11963405 | 8..122 | 575 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:00:00 has no hits.
FMO01585.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:52:54 Download gff for
FMO01585.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3068-RA | 153..1271 | 1..1110 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:35 Download gff for
FMO01585.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aur-RA | 159..1277 | 1..1110 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:19 Download gff for
FMO01585.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aurA-RA | 159..1277 | 1..1110 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:19 Download gff for
FMO01585.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11963282..11963405 | 1..122 | 96 | -> | Plus |
| 3R | 11963470..11963770 | 123..423 | 100 | -> | Plus |
| 3R | 11963833..11964502 | 424..1087 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:35 Download gff for
FMO01585.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7789004..7789127 | 1..122 | 96 | -> | Plus |
| arm_3R | 7789192..7789492 | 123..423 | 100 | -> | Plus |
| arm_3R | 7789555..7790224 | 424..1087 | 97 | -> | Plus |
