FMO01586.5prime Sequence
1197 bp (999 high quality bases) assembled on 2008-03-21
> FMO01586.5prime
CAGTCGACATGTCCAATCCTCAGCCTAATGTCACCGCCTATCTGGCGACC
CAGAAGAAGACCACCAACAAAGAACTCGCCGCCGAATGGACGCTCATCGA
GGAGCTCTACAATGAAAAACTCTGGAATGAGCTGACCATCAAACTGGTGA
CCTTTGTGCGCCACGAATCCTTGCAGGACGAAACTGCGCTGCTGCAGCTC
TACCAGAATTTCCTGTCCACCTTCGAGACCAAAATAAACCCCTATGGCCT
CATCCAGATTCTCGAGGTGGTGGTTGACAACATCGGTGACAAGAAGGAGG
CCATCGAGTTCTTGGAGAAGATGAAGGACAAGGTGAAGATCTGCGACGAG
GCCGTTTGGTATCTGCAGGTGATGCAGGGTAATCTGTACCTCAGCAACCT
GAACGATCTGAATGCCACCAAGAAGATCATCGAGGAACTGCGTGATGTCC
TAGAGGAAGCGGGTAATGTGACGCCCGTTCACGGCAAATACTACATGCTG
GCATCCCAGTATTATCGGCGAGTGGGCAAGCACAGCGATTACTACCGATG
TGGCCTACAGTTTCTGGGCTGCTCCATGGATGAGTACCCCCGTGATCAAT
GGGCCCAGCAGGCATTCTTCTTGGGTCTGGCTGCTCTCTTGGGCGATGGT
GTCTACAACATAGGCGAATTGCTGGCTCATCCCATTCTTGAGTCGCTTAA
GGGCACGGAAAATGAGTGGCTCATGGAACTTCTTAAAGCCTTCAACACGG
GCGATATTAACAAGTTTAATGACATGAAGAAAATCTGGTCCAAGATTCCC
GATTTGGCTGCCCAGGAGGTCAAGTTGCGCCAGAAGATCTCCCTCCTTTG
CCTCATGGAGATGACCTTCAAGCGCTCAGCCATCGAGCGAGCCATCTCCT
TTACCGACATCGCGCAAGAGACCAAACTGCCCGCCAAGGAAGTGGAACTG
CTTTATCATGAAGCTCTGGCTTTGATCTCGTCGGCGCGAGAATGACCAAG
TGGCTGGAGTGTTACATGTCGTGGGGTGCATCCACCCGTCTCAACGCAGC
AGATTGTCGGCATGGCACGCACTCTTGGACCCTTGAATGGGCGCCATCAC
GAACATGGGAAAACTGATGAAATCGTGCCCCGATTCTTCACATGCAAGCC
TTTCCTGAACCATCTCGTTGCCCCCCCAGCTCACGGTATGATGGCGT
FMO01586.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn9-RA | 1340 | CG10230-RA | 107..1234 | 9..1129 | 5165 | 97.9 | Plus |
| Rpn9-RB | 1578 | CG10230-RB | 217..1344 | 9..1129 | 5165 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23732041..23732573 | 765..233 | 2665 | 100 | Minus |
| 3R | 32079331 | 3R | 23731621..23731981 | 1119..764 | 1125 | 93.7 | Minus |
| 3R | 32079331 | 3R | 23732627..23732740 | 232..119 | 570 | 100 | Minus |
| 3R | 32079331 | 3R | 23732796..23732905 | 118..9 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:37:50 has no hits.
FMO01586.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:52:56 Download gff for
FMO01586.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10230-RA | 84..1224 | 1..1133 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:30 Download gff for
FMO01586.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn9-RB | 210..1349 | 1..1133 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:39 Download gff for
FMO01586.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn9-RB | 210..1349 | 1..1133 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:39 Download gff for
FMO01586.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23731604..23731981 | 764..1133 | 93 | <- | Minus |
| 3R | 23732043..23732573 | 233..763 | 100 | <- | Minus |
| 3R | 23732627..23732740 | 119..232 | 100 | <- | Minus |
| 3R | 23732796..23732913 | 1..118 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:30 Download gff for
FMO01586.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19557326..19557703 | 764..1133 | 93 | <- | Minus |
| arm_3R | 19557765..19558295 | 233..763 | 100 | <- | Minus |
| arm_3R | 19558349..19558462 | 119..232 | 100 | <- | Minus |
| arm_3R | 19558518..19558635 | 1..118 | 97 | | Minus |
