FMO01587.5prime Sequence
1219 bp (1040 high quality bases) assembled on 2008-03-21
> FMO01587.5prime
CAGTCGACATGCGTGCGCCTGATGCGCTCCTGCTCCGCGTCGCTCTCCTG
CTTCTACTGCTGACCACCGTCCGCGGAACCCTCGCCCCGGACAGCCACAA
ATCGAAGAGCAAGACCAAGGAGAGTGCTCTGCGTGGCGGTCCGCAAGACC
AAGATGTTTTCGATCTGGGCTTGGTTAGTCCCGAGCCCCTGGCCAAGGAT
ATCGTGAGCAATCATCGCGGGTACTTCAAGGAGACGGGATTGCGACGCTT
CAATGGCACCACCTTGGGCTATGTGACTCCATGGAACTCGCATGGCTATG
ATGTGGCTAAGATATTTGCCAAGAAGTTCGACATTATCTCGCCGGTTTGG
CTGCAGATTGTTAAGCAGGGAGATCGTTATGCCGTAGCCGGAACCCATGA
CATCGATGCGGGTTGGCTAACCGATGTCCGGAGAAAGGGTAAACAGGTGC
ACAATCAGCGAACGGTTAAAGTGTTTCCCCGTTTTATATTCGATCACTTC
ACTGATCGGGACATTAAGCTCTTGCTTAGCGACGCCCAGGAGAGGACGAA
AGTCAACGACGTGCTGATCAAGTGCTGCAAGGATAATGGCTTCGATGGAC
TCGTCCTGGAGGTGTGGTCCCAGCTAGCTGGACGCATAGATGACAAAATT
CTGTACACACTGGTTTTGCAAATGGCCAAAGAACTACAAAAGCAACAGCT
GCGACTCATTTTGGTCATTCCTCCATTCCGCAAGGAAACAGGCCACCTTT
TTGGAGAAAAGCACATGGACAAGCTGTTCAAGCACATATACGCCTTCTCT
CTGATGACTTACGACTTCTCCAGCGTGCAGCGTCCCGGAGCAAATGCACC
ATTATATTTCGTCCGTAAGGCTGTGGAGACAATAGCTCCAGAAAGGTGCG
CTGATATGACGGCTAGAGGGCTAAAATTCTGTTGGACTGAATATGTACGG
AATGATTACACCGCCCGATGGAGTGGACTCATCACTTCTCCCAGTACTTG
GATCTAGTCAGGCATGTGAAGAAGCACCTTACTTACGATGAGCGGATGTG
AAAAATTTCTTTGAATCAAACGATGACGTTCGCCCAATTGTCCTTTTATC
CACATTCTCTATCATAAACGAGCGAATAAGCCTGCGCCAGGACTTGCACT
GGCAATTCCATTTGGACTTGGCCAAAGAGTCTAAACAAATTTTTATACGA
ATCTTCTCCTGCGAAGACT
FMO01587.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8460-RA | 1368 | CG8460-RA | 95..1279 | 3..1175 | 5235 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8198148..8198543 | 675..1065 | 1560 | 97 | Plus |
| 2L | 23513712 | 2L | 8197287..8197565 | 3..281 | 1380 | 99.6 | Plus |
| 2L | 23513712 | 2L | 8197877..8198082 | 470..675 | 1030 | 100 | Plus |
| 2L | 23513712 | 2L | 8197632..8197821 | 282..471 | 950 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:29:26 has no hits.
FMO01587.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:52:57 Download gff for
FMO01587.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8460-RA | 90..1239 | 1..1142 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:50:55 Download gff for
FMO01587.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8460-RA | 93..1242 | 1..1142 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:19 Download gff for
FMO01587.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8460-RA | 93..1242 | 1..1142 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:19 Download gff for
FMO01587.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8197285..8197565 | 1..281 | 99 | -> | Plus |
| 2L | 8197632..8197821 | 282..471 | 100 | -> | Plus |
| 2L | 8197879..8198082 | 472..675 | 100 | -> | Plus |
| 2L | 8198149..8198548 | 676..1067 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:50:55 Download gff for
FMO01587.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8197285..8197565 | 1..281 | 99 | -> | Plus |
| arm_2L | 8197632..8197821 | 282..471 | 100 | -> | Plus |
| arm_2L | 8197879..8198082 | 472..675 | 100 | -> | Plus |
| arm_2L | 8198149..8198548 | 676..1067 | 96 | -> | Plus |
