FMO01588.5prime Sequence
1206 bp (994 high quality bases) assembled on 2008-03-21
> FMO01588.5prime
CAGTCGACATGTACCCGGCGCAACCGGCAAAGGTGGCGTTGGCCGGTCAA
CCGATATCCGCCGGAAAACCACCACGCCACAGCCCTGTTCAGATGAAGTC
TATCCCTTTGCCCGTCTTCGAGCTGCCGGAATACGTGTGCGTGGAGACCA
AGTGGGTGACACGCAAGTACGCGATAGAGAATGGCATTCCAGTGAAAGAA
CTGCATGCCCCGATCACCAATGGAGGCGCTACAGAGTCTCCCAAGAAATC
CGTACAGCAGAAGAGACTCAACGAGGTCACTGGAATGTTTGCGAACGAGG
CTATGGTGCCGCGCAGAGAGCGCGCCATTCAAACAGAGAATGCGGGCACT
AAGGATGCGGGCATTCAATGCCGTCGCGATTCGGAGGAGTGGTATTTACC
AGAGGAACGGCCAAAGGATACCGGTTCTGAGGCCTCCAATTCCGACAAAT
TTCTCACCTACGTGAGCGAGAACACATTCATATTTCCCAACGGCATGATG
GAGTGCGCGGTGTGCGGCGATGTGGCCAAAACCTTGCTGGAGCACCAGAG
CCACATGACCGCGCACTATGGACCTGGTGCTCTGTGCTTTCGCTGTGGTC
AGCGTCTGGACCACCAGAAACAATTGAAGCAACACAGTCTGAGCTGTCCC
GCTCTAGCGCCCAGGAAGTCATCGATGCTCTTTAAATGCCCACATCTACT
CTGCAACGCCATGAGCCACTCAGAGATGCAGTTGCTCAGGCACCTGAGAA
ACCATAGCGGCAGGAAGTGCTACAGATGTCTTCAGTGCAAACGTTACTTC
AAGACCACCACCTCTCTTTTGGTACACCGAAAAAAGAACAGAGTTGTGCC
AAGGCGAAAGTGGTCGTCCTATTTCGCGAACACAACGGGTTGCCCAATGG
AAGAGGTGATCCCAGACGTTGCTCAGTTTGCTTGAAGCGTTTCAGCAGCG
AGCGGGTATGCCTGCGCACGGAGACAGTGCATCCTTGGTCATTTTAGACG
CTGTCCAGGTCTCAGAGGAGCTAGCAAGCTTTCTAAGACATCGTTGGCGC
GCCGGGCCAGGTAGGTGTCATATCTTATCATATCATAATCTAATCCACAC
TAGCCTAGGAATCTGGTCTGACTATGGCTTGGAATCCCATAAGCGCTCCG
GGCAACCGACGTCTGAACATCCGATTGGAATCTGAGAGAGTCTATTAGGT
GATCTA
FMO01588.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:41:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33213-RA | 1279 | CG33213-RA | 174..1182 | 5..1009 | 4915 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:41:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27918289..27919287 | 1000..5 | 4820 | 99.3 | Minus |
| X | 23542271 | X | 3797613..3798565 | 1000..33 | 3250 | 89.7 | Minus |
| X | 23542271 | X | 3798561..3798899 | 361..5 | 940 | 84.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:41:36 has no hits.
FMO01588.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:52:59 Download gff for
FMO01588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33213-RA | 156..1185 | 1..1023 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:41:55 Download gff for
FMO01588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33213-RA | 184..1213 | 1..1023 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:30:11 Download gff for
FMO01588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33213-RA | 171..1200 | 1..1023 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:30:11 Download gff for
FMO01588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27918289..27919290 | 1..1000 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:41:55 Download gff for
FMO01588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23744011..23745012 | 1..1000 | 99 | | Minus |
