FMO01590.5prime Sequence
1197 bp (1007 high quality bases) assembled on 2008-03-21
> FMO01590.5prime
CAGTCGACATGCCAGGCACCAGTGACACACGACGACTGGTGGACGCCCTG
GACGAGGATGACGAGATTCTGGGCACGGAGGGCAGCTTCGTTCCCGCTTT
TCGTCCGCAGGACCACCATGCGGATGAGCAATGTCTCATGGAACGCCAGC
AGGACGAGGTAGTTTTGGTGTCCAACGAACCCGAGAGTGGACGACTCTTC
ACCTACCTCGTGTTCTACCTGTTGGGCATTGGTACCATGACCCCGTGGAA
TTTCTTTGTGACTGCGGAAGATTACTGGAAGTACAAGTTCCGGAATGCAT
CGATTAATAACACAGACCTGGAGGAAGAGCTCACCCCGTTGCAGAAGAGT
TTTACCTGCGACTTGGCTCTCACGGCCACTATTTCTGGGACTACATTTCT
GCTGCTAAACGCCATTTTCGGACACCATGTGTCCCTGCGCACCAAGATGT
TAGGAACGCTGTGGATGATCCTCATCCTTTTCGGGGTTACAACTGGCTTC
GTGGAGATCAACACAGACACGTGGCAGGAACAGTTTTTCCTAATCACTCT
CATCATTGTAGTGCTGCTAAATATATCTGCGGCTACAATGTCGGGAGCCC
TCTACGGAGTCGCTGGTCTATTTCCCTCCGAGTTTATCACCGCTGTGGTT
AGCGGACAGGCTCTTGGTGGTATCCTCACAGCCCTGGCCTTCATTCTTGT
GCTTGCATTCGACACGGGTCCCAATACCACTGCATTCATCTTCTTCATTG
TGGGAGGAGTGCTCATCCTGCTTTGCATTGTGTGCTACGTAATCCTGGCT
CGAAAGCCTTTCTTTAGGTATTATCTCGAAGTGGCGACAAGTACAAAGTC
ATCCGGGGCAGTGCCCTCGCACAACCGGAATGGAAGCGCTGAGGGCTTGC
CGCTTGAGCCTATTTTGCGTCAGGTCATGTCGAGATCTATCTGCATGCCA
TTTCCCTAGCGCTCTCTATACACGACCCTGTCTGTCTATCGCAGTTACGT
GCTATGCAGTCGAGTACGCCACAGCGTGTGGACAGATGTTATTTCTGCCG
TCTGACTACTGATATTAACTGGCGGTGAACTATTGTCGTTGTTGCTGCTG
ATGACGACATACGAACCTCGCTACTATTATGATGCATGGCTTGTTCGGTA
TTCTATGTTCCACTCCAGAAACGGACTTTCTGCCAGTTGTGTAAACA
FMO01590.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:58:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ent1-RC | 1905 | CG11907-RC | 122..1211 | 9..1084 | 4960 | 98.1 | Plus |
| Ent1-RB | 1923 | CG11907-RB | 140..1229 | 9..1084 | 4960 | 98.1 | Plus |
| Ent1-RA | 1972 | CG11907-RA | 189..1278 | 9..1084 | 4960 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:58:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 356418..356837 | 990..574 | 1840 | 98.6 | Minus |
| 2L | 23513712 | 2L | 356891..357191 | 573..273 | 1505 | 100 | Minus |
| 2L | 23513712 | 2L | 357423..357686 | 272..9 | 1320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:58:27 has no hits.
FMO01590.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:53:01 Download gff for
FMO01590.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11907-RB | 126..1174 | 1..1040 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:51:34 Download gff for
FMO01590.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ent1-RA | 181..1229 | 1..1040 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:38:40 Download gff for
FMO01590.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ent1-RA | 181..1229 | 1..1040 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:38:40 Download gff for
FMO01590.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 356367..356837 | 574..1035 | 97 | <- | Minus |
| 2L | 356891..357191 | 273..573 | 100 | <- | Minus |
| 2L | 357423..357694 | 1..272 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:51:34 Download gff for
FMO01590.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 356367..356837 | 574..1035 | 97 | <- | Minus |
| arm_2L | 356891..357191 | 273..573 | 100 | <- | Minus |
| arm_2L | 357423..357694 | 1..272 | 98 | | Minus |
