FMO01593.5prime Sequence
987 bp (987 high quality bases) assembled on 2008-03-21
> FMO01593.5prime
AACCAAGTTATCAGTCGACATGGAGTCGCCCCCGATGTTCAATAGTGTGG
AAGATGAGTGCAGATATTGGAAGGAACGATCTAAGCAGTACCACAAAGAG
TGGACAGACGTGAAACAGGAGTACGACGAGTTTGTGGAGCAGTCCCGCGA
AATGGAAATAGAAATGGACGCCACTCTGGACCAGAAGCAGAGTATAATCA
AAGATCTCACAGCCAAACTCACAATGTTTGAGCGGGAAAACGAGTCTCTC
AAGCTCAAGTTGGAATCGCATGGCATCGATATGTCAAACATGGAGAAACA
GCTGGAAACGGTGAAGAAGGATCGCGACACCATGAAGGTGTACCTGCGGC
AGCTGGAGCAGAAAAACGACGATTTGGAACGTGCCCATCGCATACTTAAC
GAAAGCATAGAGAATTTCGAGAAGATGCTGGATCAGGCCTACGAGAAGAA
CGCCCTTCTGGAGCTGGAAGTGGATGAAAAGGGATTGCTGCAGGAAAAAC
TACAGCGATTAATGGATGAGACGAGAGATCTCAAACAAGAGCTGAACGTC
AAGTCACGCTTTACCCCAGTGGTCAATGGAACGAGCGTTCCCACGGCAAA
CGACACAAATACGGTCAACAGCTCGATGAACTCGTCCGCCTCGCTGCCAA
ATGGTATTGTTGCCAATGGCGAATTGGTAAAACACGACAATGCTGTCGCC
ACAAGAGCCACCAGCGTCAGCGTCAACGCCCTCAATGGCAGTTTAGTTAA
TAGAAACGAATATAACCAGCAGCATTCGCTTAAGAGCGATGGAGACGAAA
CTGAAGACGTACCGCGAGAATGGTCAGCCAATGCCGCAGCGACACCGCTC
CTCCCAGCAATCCACACATCCGGCGCTGGCCGGACTGCCTTGCTTCTCGC
TGGATGCCGAGTAGTGTGATTCTGCAGTTCAGCGTGATCCACAAACCCCA
AATCCGAAACCCAATCACCGCAAGCTTTCTAGACCAT
FMO01593.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nudE-RA | 1975 | CG8104-RA | 395..1345 | 20..969 | 4730 | 99.9 | Plus |
| nudE-RD | 1246 | CG8104-RD | 395..1161 | 20..786 | 3835 | 100 | Plus |
| nudE-RF | 2133 | CG8104-RF | 395..1160 | 20..785 | 3830 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9900421..9900696 | 252..527 | 1380 | 100 | Plus |
| 3L | 28110227 | 3L | 9900759..9901019 | 526..786 | 1305 | 100 | Plus |
| 3L | 28110227 | 3L | 9902151..9902335 | 786..969 | 875 | 99.5 | Plus |
| 3L | 28110227 | 3L | 9900153..9900306 | 100..253 | 770 | 100 | Plus |
| 3L | 28110227 | 3L | 9900005..9900086 | 20..101 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:29:37 has no hits.
FMO01593.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:53:05 Download gff for
FMO01593.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8104-RA | 404..1357 | 17..969 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:51:00 Download gff for
FMO01593.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nudE-RA | 392..1345 | 17..969 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:26 Download gff for
FMO01593.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nudE-RA | 392..1345 | 17..969 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:26 Download gff for
FMO01593.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9900002..9900084 | 17..99 | 98 | -> | Plus |
| 3L | 9900153..9900306 | 100..253 | 100 | -> | Plus |
| 3L | 9900423..9900696 | 254..527 | 100 | -> | Plus |
| 3L | 9900761..9901018 | 528..785 | 100 | -> | Plus |
| 3L | 9902151..9902335 | 786..969 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:51:00 Download gff for
FMO01593.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9893861..9894118 | 528..785 | 100 | -> | Plus |
| arm_3L | 9893102..9893184 | 17..99 | 98 | -> | Plus |
| arm_3L | 9893253..9893406 | 100..253 | 100 | -> | Plus |
| arm_3L | 9893523..9893796 | 254..527 | 100 | -> | Plus |
| arm_3L | 9895251..9895435 | 786..969 | 99 | | Plus |
