FMO01594.5prime Sequence
1222 bp (1022 high quality bases) assembled on 2008-03-21
> FMO01594.5prime
ATAATACAAAGTTATCAGTCGACATGGACACTCTGAAGGGCATGCTGAAG
GCGTACGAGGCGTGGGTGGGCAAAAACCCCGACGTGGTGGGGGATTTTGA
GACCACAGCCAAGTGGGTATCCTACTTTATAGCAGGTCGCATTTCCTCAT
CAAATGTGGTCAGTGAGCTGGTATATACACTGTCAAACATGCTGGTGTTC
TACAACGACCGGATCATCGAAAAGGCACGCAATTCCGAGGAGAATTCGGT
GATCCACCTGCAATCGAAACTTTGCTACCGTCTAAAGGTCACGTTGACGA
CGCTCGAATATAGCGAGGTTTTCATCGAGATATCAGCCCGTCGGCTTTTC
GGTCAATCCGGCAAGTGGCTGGTGATAGCGCTAATACAGGCCTTCAAGGC
AGCGGGCCGTTTCTTTATCTTGAAACACTCAACCTCGGATATAATCACCT
CACCGCCCATCGCCGCACTGAATCGAAGGGCCAAACAGAGGAAGAATTCG
GGGGATGGTGTGGCCTCCTCCACGAACGATTTATTGCAGTCCCAGCACTC
CATTACCTTCCAATTGAAGCGATCTGGCCGTGTGATTCGTAAAGTGGAGG
GTGCTCCTCCCCTGCAATACCGCGACTTCAAGCTTCATATAGACAACAAT
GAAGCGGCGAAGACGCAAATTCCGAGGAAACTCCTGCAAGCAGAATACCT
GTATATATCGAAGCCACTAATCCACCTGGTCGCCATGGGGCTGTTCGGCC
GGAGAAGTTGGAAGCAATATATGGTAGCATTATCCATTGATTTGTATAGC
ATTCACCTCTACCGCCAGCATCGCGACCTATGTCCAAGCAACAAAAACTG
GAGCTGAGCAGCGATGCATAAACATCATGTACTTCCTGGTCCGATCGCCG
TTCTATGACAGCTTCACCAAATCCAGACTGGAGCGGATCTCGACTTTGTG
GCACAGTGTGCCCATTGCTAAGGTGGTTGCCAAACCCCTTAAGATTACAT
TCCCAGTGCCAAGCACTTACTTCTATTCTGTGGTCACTGCAGCTTTCTAG
ACATTCGTTGGCCGCGGCCAGGTAAGTGTCATATCCAAATCTAATCTAAT
CATATCCCACTAGCCTAGGAATTCTGTCATAGACATATGCTGATTCTCCA
CAATAAAGCTGGCAACGTAGCGTCGGACAATCGAATGGGATTCTGATGTC
ATACTGGATCATCTACCACGGA
FMO01594.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pex16-RA | 1439 | CG3947-RA | 111..1129 | 24..1035 | 4860 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20777084..20777985 | 1026..133 | 4105 | 98.6 | Minus |
| 3L | 28110227 | 3L | 20778041..20778154 | 137..24 | 570 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:40:00 has no hits.
FMO01594.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:52:51 Download gff for
FMO01594.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3947-RA | 87..1112 | 24..1042 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:39:05 Download gff for
FMO01594.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex16-RA | 111..1136 | 24..1042 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:10:52 Download gff for
FMO01594.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex16-RA | 111..1136 | 24..1042 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:10:52 Download gff for
FMO01594.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20777084..20777982 | 136..1026 | 98 | <- | Minus |
| 3L | 20778043..20778154 | 24..135 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:39:05 Download gff for
FMO01594.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20770184..20771082 | 136..1026 | 98 | <- | Minus |
| arm_3L | 20771143..20771254 | 24..135 | 100 | | Minus |
