FMO01595.5prime Sequence
527 bp (527 high quality bases) assembled on 2008-03-21
> FMO01595.5prime
CAGTCGACATGGTGGCGTACTACGACGAGTGCGACGCAGCCGAGAACCCC
AAGACCCTAACCGACTGGGTCCGTAACTTCCGCGTTAAGCGCCAGAAAAT
GCGTCGCAAGCTAAGAGGCGCTGGCAGCGACCTACGCGTGAACGCCATTT
TGTCGACGGCCCTGCTCCACGCAGAGCACGAGCTGCGTAGAAAGCAGCAG
GAGCGCTTCAGTCGCTGGCTGGACATTCAAACACGGTTTGTGCCCCACGG
CAGAACGCACTGCGCCAGTGACGCGTACTCTGCAGTGGCGACCTCGACCA
CCAAGGCTGCCGCAGAAGCAGAGGCGGAAAGCAATTTATGGAGCAGCGAG
CTTAGTAGCCTCGACAGTTTTATGCGTAGCTTAAGCAGCAACAATGGCAA
CCAAGACACATGCAACAACAATAACAATGGGAGCAACAGTTACACGGGCG
CCAGCAATAACAATAACAGCAACAATGAGCAGCACAGCTGCGCCATTGCC
GTGGCCAGTGCAAGCTTTCTAGACCAT
FMO01595.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33229-RB | 1754 | CG33229-RB | 398..903 | 4..509 | 2515 | 99.8 | Plus |
| CG33229-RA | 1500 | CG33229-RA | 144..649 | 4..509 | 2515 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 224249..224754 | 4..509 | 2515 | 99.8 | Plus |
Blast to na_te.dros performed 2014-11-28 19:37:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6837 | 384..484 | 213 | 70.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6661..6824 | 326..488 | 203 | 65.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2311..2419 | 384..495 | 191 | 68.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2512 | 313..484 | 181 | 58.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1063..1158 | 376..474 | 172 | 68 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6813..6912 | 384..484 | 161 | 66.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6767..6919 | 307..475 | 158 | 61.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1006..1179 | 297..472 | 145 | 57.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2455..2550 | 378..472 | 136 | 64.6 | Plus |
| ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 2608..2685 | 390..467 | 129 | 62.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1062..1158 | 330..426 | 125 | 58.8 | Plus |
| accord2 | 7650 | accord2 QBERT 7650bp | 4407..4493 | 475..389 | 119 | 65.6 | Minus |
FMO01595.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:52:52 Download gff for
FMO01595.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33229-RA | 117..629 | 1..517 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:26 Download gff for
FMO01595.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33229-RA | 142..654 | 1..517 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:34 Download gff for
FMO01595.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33229-RA | 142..654 | 1..517 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:34 Download gff for
FMO01595.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 224247..224759 | 1..517 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:26 Download gff for
FMO01595.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 224247..224759 | 1..517 | 98 | | Plus |
