FMO01601.5prime Sequence
1226 bp (1012 high quality bases) assembled on 2008-04-11
> FMO01601.5prime
CAGTCGACATGGGTAAGAAGCAGAAAATGAAGAAGGCTGCCCAGATGGCG
ACCGCTGCCGAGAAATTGAAGACCGCTGCCGAGAAATCGAAGACCGCTGC
CGACAACGTGGTGGCCAAAGAAAAGCCTGCCGAAGAAGCCTCTCCCTCAC
CAAGTGGCAGTGGAAAAAAAGGGAAGCCCAAGGCAACGCAAAAACCAAAC
GTCGCAAAGGCACTTCAGAAGGAGATCTCCAGTTCGGAAGACGCCTTGGA
TGTCAAGAATAAACCTCCGGCAGGCTTTAGTGGCGCAAAGGGGAAGCCCC
ACATCATGGGTCAAATGGACCCGGCCTACCGCAACAAGATCAAGAAGCTG
ATGAGCCTGGCCAAACAGCTGCCGCCCAATGTGTTCAGTCTGCCGAACTC
GCAGAAGGAGGAGGGCGCCTCCGCCGCGAAATCCTGCGTAGTTGAGGATG
ATCAGAGCACGGACTCCGATGACGCCCCGGATCTCGTGGAAGCGGATCCC
AAGGAGACCCAACCGGACGAGCAGGGTCAACTCGGTACGGTGGCCGTGCG
AACACGTGAGGTATCAAAGCAGTCTCGCGGCGAGCGGAAGGCACGCCGGA
TCCTCATGAAGCTGGACCTGAAGCCCATGGAGAACGTGGCCCGAGTGACC
ATGAAGAAGGGCAAGAACATCCTCTTGTACATCGATCAGCCGGACGTCTA
CAGAGTGGCGCACTCGTCGACGTACATCTTCTTTGGGGAGATCTGCGTGG
AGGACACTAGCACCACGTCCGTCGCCTCCCAGGCAGCTGTCAAGGCGGCC
GAGCGATCCGTGGAAACCTCGCCTGCCGGGCGGCAAGGTAACGAGGATGG
AAAAGCCCCTGGCGAGGAGTCCCCACACGACGACGACGACGACGAGAACG
ATGGCGAGGACGCGGATGCCATGGGCCTACATGCGAAGACATCGACTGGT
ACAGATGCAAGCCGCGTGCTCGCGCAAAAGGCGATCCAGCGCTGCTGAAG
AACGACACGATGTGGTCAATGCCATCATGGCCCTGACTGTGGTGCAAGCT
TTCTAGACCCATTCGTTGGCGGCCGGCCCAGTAAGTGTCATAATCATAAT
CCTAATCAATATCATATCCACACTAGCCCTAGGAGAATCTGTCCAGAACT
AGGTCTGGAATCTCACAATAAAAAGTCCGGGGGTCACCGAGCGTTCGAAA
CAAACTCGCGAGTAGTAGGGTCTCGT
FMO01601.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:31:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4415-RB | 1288 | CG4415-RB | 134..1172 | 9..1042 | 5010 | 99.2 | Plus |
| CG4415-RA | 1368 | CG4415-RA | 134..1172 | 9..1042 | 5010 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:31:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1037379..1038417 | 9..1042 | 4855 | 98.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:31:27 has no hits.
FMO01601.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:50:24 Download gff for
FMO01601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4415-RA | 138..1189 | 1..1048 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:00 Download gff for
FMO01601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4415-RA | 127..1178 | 1..1048 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:01:37 Download gff for
FMO01601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4415-RA | 127..1178 | 1..1048 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:01:37 Download gff for
FMO01601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1037372..1038417 | 1..1042 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:00 Download gff for
FMO01601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1037372..1038417 | 1..1042 | 98 | == | Plus |
