FMO01602.5prime Sequence
1258 bp (991 high quality bases) assembled on 2008-04-11
> FMO01602.5prime
TATAAAACAAAGTTATCAGTCGACATGAGGTACATTTGCAGGACCTGTTC
TCGTATGGCTGATCCTGCGGTAGCCAAGAATCTCTTCGATCCATCGAGTT
CTTCCGTTTTGCGTCAAATAGAGACTCTAACTAACTTGCAGCTAAAAGAG
GACGGCAAGTTGCCCAGGTTCATGTGCCAGGACTGCCAGCACGACCTGCA
GATTGCCATCGATTTCCGCCGCGTTTGCATCGAGGCCCAGGAGCTCCTTG
AACTTCAGCTAAGGCAGGTGGAAAAGGAGGAGGAGGCGTTCGAGAGCCTG
GCGGAGCAATGGCTGGATGATTGTCCGGATGAGTTGTCCAACTTGTCGCC
AGTGCTACAGCTGAATGATCGCATGGATTTTATCTTCGATCCCGAGCCAC
AGGATAAGAATACGGATGAGTTGGCTTCCATAAAGACCACGACAACAACA
GAGTATATGAATGCATACCAGTCAGTGGCCAGTCCGCAATCTTCTCCAGA
ACTTTCAACAGATAGCCAGTTGTCGAATGAGCACTTTGACATGGGCCTCT
CTCCCGAATCAGAACCCGAAAGTGAAGCTATCGATAATCGGGACACTTCC
TCCAGCCACACGTGCAGCAAGTGTGGCCTCGAATTCGAAAACGTGGACGA
ACTGAAGCTGCACAAATACCATCTGCACGACATCCCGCCAGATACCAAAT
TCGTCTGTGACCACTGTGACGAGGGCTTCCGATCAGCAGCCGCACTTACG
CGGCACTGCAATGTGATTAATCTTCCATTGACGCACTCCTGCACCAAGTG
CAAGAGCCAATTCCACAATCACATTCTGCTGGAGACTCACAAACAGCGGT
GTCTCAGGCCGCCGGCGTCCCAGCATGTGTGCCACATATGTGGCAAGCAT
CTGACCACGGTCTTTAATCTGAAGAATCACCTGGTTCGCCACGCGGGCAC
ACGACGCCACAAATGCGACCAGTGCAGCGCATCCTTTTATACAGCCGCGA
ACTCTGTTTCCATCAAAAACCCACACACGACCGTCCTTACATTTGTCGCT
CAACTTGTGCAAATCTTTTCGCTTTTGCAGCGCCCGCAGCATGCATTGAA
GGGATTCAATTGGGACTCCAGCAAGCCGTATTCTCCATGGCTAATACTTG
CTCAAGCGCTGTTACACTTCAGGAGTCAGACATCAAGTATCAACTTGGAC
TGCGATATCAGGTGTGGAATCTGTGCGCGCTCTCTCGAATATACGTCTTT
CGTGACGA
FMO01602.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:31:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31388-RA | 1472 | CG31388-RA | 54..1159 | 24..1126 | 5120 | 97.9 | Plus |
| CG31388-RB | 1562 | CG31388-RB | 54..729 | 24..699 | 3380 | 100 | Plus |
| CG31388-RB | 1562 | CG31388-RB | 818..1249 | 698..1126 | 1750 | 94.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:31:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11238047..11238609 | 136..698 | 2815 | 100 | Plus |
| 3R | 32079331 | 3R | 11239110..11239428 | 783..1096 | 1230 | 95.3 | Plus |
| 3R | 32079331 | 3R | 11237868..11237985 | 24..141 | 590 | 100 | Plus |
| 3R | 32079331 | 3R | 11238957..11239041 | 699..783 | 395 | 97.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:31:25 has no hits.
FMO01602.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:50:26 Download gff for
FMO01602.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31388-RA | 51..1147 | 18..1113 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:46:12 Download gff for
FMO01602.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31388-RA | 51..1147 | 18..1113 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:10:54 Download gff for
FMO01602.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31388-RA | 51..1147 | 18..1113 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:10:54 Download gff for
FMO01602.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11237865..11237985 | 18..141 | 97 | -> | Plus |
| 3R | 11238053..11238609 | 142..698 | 100 | -> | Plus |
| 3R | 11238957..11239041 | 699..783 | 97 | -> | Plus |
| 3R | 11239111..11239433 | 784..1101 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:46:12 Download gff for
FMO01602.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7063587..7063707 | 18..141 | 97 | -> | Plus |
| arm_3R | 7063775..7064331 | 142..698 | 100 | -> | Plus |
| arm_3R | 7064679..7064763 | 699..783 | 97 | -> | Plus |
| arm_3R | 7064833..7065155 | 784..1101 | 95 | -> | Plus |
