FMO01603.5prime Sequence
1232 bp (1063 high quality bases) assembled on 2008-04-11
> FMO01603.5prime
CAGTCGACATGTCCGACGGCGTCAGCATCTTGCACATCAAACAGGAGGTG
GACACTCCATCGGCGTCCTGCTTTAGTCCCAGCTCCAAGTCAACGGCCAC
GCAGAGTGGCACAAACGGCCTGAAATCCTCGCCCTCGGTTTCGCCGGAAA
GGCAGCTCTGCAGCTCGACGACCTCTCTATCCTGCGATTTGCACAATGTA
TCCTTAAGCAATGATGGCGATAGTCTGAAAGGAAGTGGTACAAGTGGCGG
CAATGGCGGAGGAGGAGGTGGTGGTACGAGTGGTGGAAATGCGACCAATG
CGAGTGCCGGAGCTGGATCGGGATCCGTCAGGGACGAGCTCCGCCGATTG
TGTTTGGTTTGTGGCGATGTGGCCAGTGGATTCCACTATGGTGTGGCGAG
TTGTGAGGCTTGCAAAGCGTTCTTTAAACGCACCATCCAAGGCAACATCG
AGTACACGTGTCCGGCGAACAACGAGTGTGAGATTAACAAGCGGAGACGC
AAGGCCTGCCAAGCGTGTCGCTTCCAGAAATGTCTACTAATGGGCATGCT
CAAGGAGGGTGTGCGCTTGGATCGAGTTCGTGGAGGACGGCAGAAGTACC
GAAGGAATCCTGTATCAAACTCTTACCAGACTATGCAGCTGCTATACCAA
TCCAACACCACCTCGCTGTGCGATGTCAAGATACTGGAGGTGCTCAATTC
ATATGAGCCGGATGCCTTGAGCGTCCAAACGCCGCCGCCGCAAGTCCACA
CGACTAGCATAACTAATGATGAGGCCTCATCCTCCTCGGGCAGCATAAAA
CTGGAGTCCAGCGTTGTTACGCCCAATGGGACTTGCATTTTCCAAAACAA
CACAACAATGATCCCAATGAGATACTAAGCGTTCCTTAGTGATATTTACG
ACAGGAATTGGTCAGCGTCATTGGCTGGGCCCAGCAGATACCTGGCTTTA
TAGATCTGCCACTTAACGACCAGATGAGCTTCTCAGGTGTCGTGGGCAGA
GATCCTGACGCTCAGCTGACCTTTCCGTCCCTACCGTCAATGGCAAGTTA
TGCTTCGCCCACGGATGTTTGATGGATGAACCGTTGGCAGAGTGCGTTAC
CGAGTTCCTACTACCCACTGGCTCCGATCGCACAGCGCATTTAGGAATCT
GCGAAGGGAGAGATCTAACTTGCTAGGCCCTTCTGTCGTGCCAAACGTGC
CACAATTTCTGGCGCTGGAGAGATTACGAAGT
FMO01603.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:48:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ERR-RB | 1730 | CG7404-RB | 116..1259 | 7..1140 | 5180 | 97.7 | Plus |
| ERR-RA | 2119 | CG7404-RA | 505..1648 | 7..1140 | 5180 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:48:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8184483..8185031 | 555..7 | 2745 | 100 | Minus |
| 3L | 28110227 | 3L | 8183889..8184429 | 1088..553 | 2175 | 97.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:48:14 has no hits.
FMO01603.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:50:28 Download gff for
FMO01603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7404-RB | 107..1169 | 1..1059 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:14 Download gff for
FMO01603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ERR-RA | 500..1562 | 1..1059 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:40:42 Download gff for
FMO01603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ERR-RA | 500..1562 | 1..1059 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:40:42 Download gff for
FMO01603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8183918..8184427 | 555..1059 | 98 | <- | Minus |
| 3L | 8184484..8185036 | 1..554 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:14 Download gff for
FMO01603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8177018..8177527 | 555..1059 | 98 | <- | Minus |
| arm_3L | 8177584..8178136 | 1..554 | 99 | | Minus |
