FMO01604.5prime Sequence
1048 bp (1046 high quality bases) assembled on 2008-04-11
> FMO01604.5prime
AAAAAACCAAGTTATCAGTCGACATGACCAAGTATAATAGTGGCAGCAGT
GAAATGCCTGCGGCTCAAACCATCAAGCAGGAGTACCACAATGGCTATGG
TCAGCCGACACATCCTGGATACGGATTTAGCGCCTATAGCCAACAGAATC
CGATAGCCCATCCCGGCCAGAATCCACACCAGACACTGCAGAATTTCTTT
AGCCGCTTCAATGCCGTCGGTGATGCGAGTGCGGGAAATGGTGGAGCGGC
TTCCATCTCAGCCAACGGATCGGGTTCGTCTTGCAACTACAGTCATGCGA
ATCATAATCCGGTTGAGCTGGACAAGCCATTGGGCATGAATATGACACCG
TCGCCCATCTACACCACCGACTACGATGACGAGAACAGCAGTCTCAGCTC
CGAGGAGCACGTCCTGGCGCCCCTCGTCTGCTCCTCCGCCCAATCCTCCA
GACCATGCCTCACCTGGGCCTGCAAGGCGTGCAAAAAGAAGAGCGTCACC
GTGGACCGTCGGAAAGCGGCCACTATGAGGGAACGCCGGAGACTGCGAAA
GGTTAACGAGGCCTTCGAGATCCTCAAGCGACGCACTTCATCCAATCCCA
ACCAGCGCCTGCCGAAGGTTGAGATATTGCGCAATGCCATCGAGTATATC
GAGAGCCTGGAGGATCTGCTACAGGAATCCAGTACCACACGCGATGGCGA
CAACCTGGCGCCCAGTTTGAGCGGCAAAAGCTGCCAGTCCGATTATCTGA
GCTCCTATGCTGGCGCTTATCTAGAAGATAAACTTAGTTTTTACAACAAA
CATATGGAGAAATATGACTTTGATGGCAATGCCAATGGCTCCAGTTTGGA
CTGTCTAAATCTGATTGTTCAGAGCATCAATAAGAGCACCACGAGTCCCA
TTCAAAATAAAGGCCACGCCCTCCGCTTCAGATACCCAATCGCCGCCCTC
ATCCGGAGCAACTGCACCCACTTCTCTGCACGTGAACTTCAAACGGAAGT
GCAGCACTGCAGCTTTCTAGACCATTCGTTGGCGGGCGGGCCAGGTAG
FMO01604.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nau-RB | 1520 | CG10250-RB | 402..1385 | 24..1008 | 4900 | 99.9 | Plus |
| nau-RA | 1532 | CG10250-RA | 402..1397 | 24..1008 | 4770 | 98.7 | Plus |
| CG10300-RA | 1484 | CG10300-RA | 1120..1311 | 1008..816 | 940 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23717427..23717956 | 553..24 | 2650 | 100 | Minus |
| 3R | 32079331 | 3R | 23712949..23713140 | 1008..816 | 915 | 99.5 | Minus |
| 3R | 32079331 | 3R | 23716500..23716625 | 675..550 | 630 | 100 | Minus |
| 3R | 32079331 | 3R | 23716363..23716439 | 749..673 | 385 | 100 | Minus |
| 3R | 32079331 | 3R | 23713208..23713275 | 816..749 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:39:27 has no hits.
FMO01604.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:50:30 Download gff for
FMO01604.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10250-RA | 394..1406 | 17..1019 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:38:53 Download gff for
FMO01604.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nau-RB | 394..1394 | 17..1019 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:10:37 Download gff for
FMO01604.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nau-RB | 394..1394 | 17..1019 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:10:37 Download gff for
FMO01604.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23716501..23716623 | 552..674 | 100 | <- | Minus |
| 3R | 23713208..23713274 | 750..816 | 100 | <- | Minus |
| 3R | 23716363..23716437 | 675..749 | 100 | <- | Minus |
| 3R | 23712940..23713139 | 817..1019 | 97 | <- | Minus |
| 3R | 23717429..23717964 | 17..551 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:38:53 Download gff for
FMO01604.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19542223..19542345 | 552..674 | 100 | <- | Minus |
| arm_3R | 19538662..19538861 | 817..1019 | 97 | <- | Minus |
| arm_3R | 19538930..19538996 | 750..816 | 100 | <- | Minus |
| arm_3R | 19542085..19542159 | 675..749 | 100 | <- | Minus |
| arm_3R | 19543151..19543686 | 17..551 | 99 | | Minus |
