FMO01606.5prime Sequence
578 bp (578 high quality bases) assembled on 2008-04-11
> FMO01606.5prime
AAAATACAAAGTTATCAGTCGACATGCTTATAATGGATATACAGACATCG
ACACATCATATCCATGGGCTCGGAACACATGAGCTCCAACATCGTATTTT
ACATCCACACATTCTACATTCAACTCAAGAAGAAACCCTTAATACAAGTA
CAGGCCAGCTAGAGCACGATTCCCAACATCTGCAACAACATCACCTCACT
CATCATCAGCAACAGGACGTTTCACCGACTTTGCACAATTTACAAAACAC
CCGCACTGGTGATAGCCTGAGCACTACTATTAATACAAATCAAAATCAAC
ATGGTCATCAACATCTTTCCGGAAGTAACATGTATACCTCGTCTCAAATG
GAAGATAAGTCAAAAGCGAACAAGTATGATGAGTATTCAAGCCGGACACT
GAGCAACATTTCGGATGCCAATACGACGCCATCTGCAAACAATTTCATAA
CACAATCCCAAGGAATAGAGTGGATAACAGCCATGAATGATATTCAAAAC
GGGGCAGAAGACTCACACAGTTCGCAGGGCAGTATTTCGGGTGATGGTAA
GATATTTCTAGCAAGCTTTCTAGACCAT
FMO01606.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:53:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sv-RH | 4501 | CG11049-RH | 107..631 | 24..548 | 2625 | 100 | Plus |
| sv-RG | 2257 | CG11049-RG | 293..817 | 24..548 | 2625 | 100 | Plus |
| sv-RF | 2749 | CG11049-RF | 293..817 | 24..548 | 2625 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:53:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 1092286..1092628 | 24..366 | 1715 | 100 | Plus |
| 4 | 1348131 | 4 | 1095574..1095716 | 365..507 | 715 | 100 | Plus |
| 4 | 1348131 | 4 | 1095791..1095846 | 505..560 | 280 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 19:53:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1486..1582 | 124..217 | 126 | 61.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2319..2386 | 145..217 | 110 | 65.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6831..6891 | 157..217 | 107 | 63.9 | Plus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 534..639 | 174..275 | 106 | 59.8 | Plus |
FMO01606.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:50:32 Download gff for
FMO01606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11049-RH | 273..797 | 24..548 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:59 Download gff for
FMO01606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sv-RF | 293..817 | 24..548 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:12 Download gff for
FMO01606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sv-RF | 293..817 | 24..548 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:12 Download gff for
FMO01606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 1092286..1092628 | 24..366 | 100 | -> | Plus |
| 4 | 1095576..1095716 | 367..507 | 100 | -> | Plus |
| 4 | 1095794..1095846 | 508..560 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:59 Download gff for
FMO01606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 1112912..1113254 | 24..366 | 100 | -> | Plus |
| arm_4 | 1116202..1116342 | 367..507 | 100 | -> | Plus |
| arm_4 | 1116420..1116472 | 508..560 | 100 | | Plus |
