FMO01608.5prime Sequence
1216 bp (789 high quality bases) assembled on 2008-04-11
> FMO01608.5prime
AAAAAAAAAAGTTATCAGTCGACATGGATCTGATAAATCCGAAATGCGCC
GTCATAGTTTTGCGGCCGCCGCCCAGGGAAGTCCCCCGTCGGCGGCTCAA
CGTCATCATTTGGCGGCGGCCATGAGCAATGGCTTCGCGGATGTCCATGC
CCATGCGATGGCGGCGGCGGACTATCAACAACAGTTGGCCGATTACCACA
GTGCATCGGCGGCAGCGGCCGTTTATGCCAACAACAATAATAATAATAAC
AATAATAGCAGTAACAACAACAACAGCAGTCCGCTAATGTTGCTAAAGGC
GGCACATGGCGGAGGTCTCAAGGATTCGGACTCGCCATCGACGACACCGC
CACCCGCCTCTTCTAGACTCCTTTCTGACTCCTCGCCATCTCCGCGATAC
GAACACAATTCCAGTCCCGGTGTGGACAGTGCCAAGTCGTATGCCTTGAG
CCAGAGGAGCAGCGGAGCGGAGGATCCATGCCAGACCAGCGAATCCGCCA
GTCCACCGCCGCAGGGCCAGAACGACTACAGTCCCGAGAATCTCAACAGC
CAGAGGGCAAAGTTCCAGCACCATCATGGAGTGAACCCACTGGCTTTGCA
CAATGCCAACCATGCCGGAAACCCCGGATGTCACAACAACAATAACCACA
TGGACCACAAGCTCCCACTGAGTTTTCTCGGTCCCCCCGCTGGCCGCTCT
TCACTCGATGACCACGGAAATGAAGGGTCAAGGAGTCGGTGGATCGTCGC
GTCGGCAATGGCTTGTCCTATAGCCACATCCCGAATTCGCATTTGATCAG
TGATCGCGGATCCCGTGGCAGCTCATCGTCGTCTCCACCACGACTACGAA
CACCAACAGCCGGGTGCACCCACTCCGCACGGCATCGTATCCATCCTCTC
CAAACCATCGCCGGTGACATCGGGGGGTTCTAATGCTTTAACAGAACTGA
CAATCCTCGCCTTCTCGATCGCCGCCGCAGCACGGTTATTGGACCATATC
TATCGCTAGCCATTGGCCCCTCTGAAGACCCCTCTGATCAATTTGACCGC
ACGCACTGTTACTGGCCAGGAATACAGAACTGGTGGCCATCCCGATCCGT
ATCTGAACGCTCTCCCAAGATGTCCGGCCAATTCTGTTCTTTGGATTCCG
CTACATCGTTAGCGTAGGGAGTGACAAATAAAAACAACTATCGGCGCCTA
AGTTTCATGGTGTATG
FMO01608.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:59:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HGTX-RA | 3014 | CG13475-RA | 824..1905 | 20..1089 | 4400 | 95 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:59:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14597789..14598717 | 944..20 | 4080 | 97.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:59:22 has no hits.
FMO01608.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2010-07-30 09:24:59 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:21 Download gff for
FMO01608.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HGTX-RA | 824..1913 | 20..1097 | 94 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:58 Download gff for
FMO01608.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HGTX-RA | 824..1913 | 20..1097 | 94 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:58 Download gff for
FMO01608.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14597786..14598721 | 17..946 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:21 Download gff for
FMO01608.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14590886..14591821 | 17..946 | 97 | <- | Minus |
