FMO01609.5prime Sequence
1231 bp (1045 high quality bases) assembled on 2008-04-11
> FMO01609.5prime
CAGTCGACATGCAGTCGTCGGAGGGTTCACCAGACATGATGGATCAGAAA
TACAACAGCGTGCGTCTTTCGCCAGCGGCATCGAGTCGCATTCTATACCA
TGTGCCCTGCAAAGTCTGCAGAGATCACAGCTCCGGCAAGCATTACGGCA
TCTACGCCTGTGATGGCTGCGCCGGATTCTTCAAGAGGAGCATTCGGAGA
TCCCGGCAGTATGTGTGCAAGTCGCAGAAGCAGGGACTCTGTGTGGTGGA
CAAGACGCACAGGAACCAATGTAGGGCTTGCCGACTGAGGAAGTGCTTTG
AGGTCGGAATGAACAAGGATGCAGTGCAGCACGAGCGGGGACCGCGGAAC
TCCACTCTGCGTCGCCACATGGCCATGTACAAGGATGCCATGATGGGCGC
CGGCGAGATGCCACAAATACCCGCCGAAATTCTGATGAACACGGCTGCCT
TGACCGGCTTTCCTGGAGTACCGATGCCCATGCCTGGCCTGCCCCAGAGG
GCTGGTCATCATCCTGCTCACATGGCTGCCTTCCAGCCGCCACCATCGGC
TGCCGCTGTCTTGGACTTATCCGTGCCACGAGTGCCCCATCACCCGGTGC
ACCAAGGACACCACGGTTTCTTCTCGCCCACCGCCGCCTACATGAATGCC
CTGGCCACTCGGGCCCTGCCCCCCACTCCTCCGCTGATGGCAGCTGAGCA
CATCAAGGAAACCGCGGCGGAACACCTATTCAAGAACGTCAACTGGATCA
AGAGCGTACGGGCCTTCACCGAACTGCCCATGCCGGATCAGCTGCTCCTG
CTGGAGGAGTCCTGGAAGGAGTTCTTCATCCTGGCCATGGCCCAGTACCT
AATGCCCATGAATTTCGCCCAGCTGCTGTTCGTCTACGAGTCCGAGATGC
CAACCGGGAGATCATGGGCATGGTGACCCGCGAGTGCACGCCTTCCAGGA
GGTGCTGAACCAACTGTGCCATCTGAACATGACAGCACCGAGTACGAGTG
TCTGAGGCTATTTCGCTTCTTCGTAAGTCACCACGTCGCAGGTTCTACGA
GGATTTAGCCAACAGCTCAATCCTGAAAGGAGCGCAGCTGAACTCCTCGC
TCTGCGTGAATCAGGCTTCTGGAATCGGAAAGTGCGCCAGTCAACAAGCG
GAATGGCCTGTCAACATCATTCAGGAACACTCCTCTGCGAAGCCCAAGGT
GCAATATTACTCTCGTCACGACCACTGCCGT
FMO01609.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:34:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tll-RA | 1965 | CG1378-RA | 233..1367 | 9..1128 | 5180 | 98 | Plus |
| dsf-RB | 3537 | CG9019-RB | 289..379 | 105..195 | 215 | 82.4 | Plus |
| dsf-RA | 3042 | CG9019-RA | 289..379 | 105..195 | 215 | 82.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:34:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30852744..30853747 | 85..1081 | 4595 | 98.8 | Plus |
| 3R | 32079331 | 3R | 30852547..30852624 | 9..86 | 390 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:34:31 has no hits.
FMO01609.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:50:36 Download gff for
FMO01609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1378-RA | 226..1333 | 1..1099 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:45 Download gff for
FMO01609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tll-RA | 226..1333 | 1..1099 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:03:07 Download gff for
FMO01609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tll-RA | 226..1333 | 1..1099 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:03:07 Download gff for
FMO01609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30852540..30852622 | 1..84 | 96 | -> | Plus |
| 3R | 30852744..30853742 | 85..1076 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:45 Download gff for
FMO01609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26678262..26678344 | 1..84 | 96 | -> | Plus |
| arm_3R | 26678466..26679464 | 85..1076 | 99 | == | Plus |
