FMO01611.5prime Sequence
903 bp (855 high quality bases) assembled on 2008-04-11
> FMO01611.5prime
ATAAAAACCAAACTTATCAGTCGACATGAGTCTACCGTCGGGTGTGGACA
TGCAGAATCTGATGTCCCAGCATCCGGTCTTGGGAGCACTGCCACCTGCT
TTCTTCTTGCGAGCCGCCTCGGAACGCTACCAAAGGACGCCCAAGTGCGC
CCGCTGCAGGAACCACGGAGTGGTCAGCGCCTTGAAGGGACACAAACGCT
ACTGCCGCTGGCGGGATTGCGTCTGCGCCAAATGCACTCTAATCGCGGAA
CGCCAAAGGGTTATGGCTGCTCAGGTGGCCCTTCGACGCCAACAGGCCCA
AGAAGAGAACGAGGCCCGCGAGCTGGGCCTGCTCTACACTTCGGTTCCTG
GCCAGCAGAATGGCAGCGACAGTGCTACGCCCACTCCGCACAGCCCCAAC
CACAGCGGCAGCGGCGGCTCGGGCAGCGGAGGATCGGGCCAGAACGGCGT
CTTCCACGGCGGGATTCCCTCGCCACCCAGCGACGGCTTCGAGGCCAGCT
CCACTCCCAATCATCACCAGCAGTCGCAGCAGCAGCAGCAGGCGCACCAC
CAAACAGCACCTTAGCCACCCACACCAGCAGTCCCAGCGGTTTCAATGGC
AATGAATCCGACACGGATGGACGCACCCGTTCCGAGCACCTCAGCGTCGG
GTTTCTCGCCCACCAGAACCGAGCTGGATGAGAGTCCTGTGTCCAAGCGC
GGAGCATCCCCTGTCGAACGAGACCGACCAGGACACGGGTCTCCGAGTCC
GGATCGCCCGAGTAAGTCCCTCGGCCCAAGGGTTGCCGGGACTGTTCAAT
CTGACCGCCGGCTTGTCCGCCCGCCCGCACTGGACCGTCCCAGCTCGTCA
GGAATCGGATTCTGGACGTGGATTCGGGGGCGGATGAGGGCACCCCCGAA
AAA
FMO01611.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dmrt99B-RA | 2350 | CG15504-RA | 211..1070 | 20..893 | 3900 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29693423..29693837 | 272..689 | 1940 | 99.3 | Plus |
3R | 32079331 | 3R | 29692801..29692955 | 20..174 | 760 | 99.4 | Plus |
3R | 32079331 | 3R | 29693037..29693143 | 172..278 | 535 | 100 | Plus |
3R | 32079331 | 3R | 29695552..29695745 | 689..893 | 375 | 90.2 | Plus |
Blast to na_te.dros performed 2014-11-28 20:39:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 5815..5869 | 239..185 | 122 | 69.1 | Minus |
TART-C | 11124 | TART-C TARTC 11124bp | 7270..7324 | 239..185 | 122 | 69.1 | Minus |
FMO01611.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:50:20 Download gff for
FMO01611.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15504-RA | 1..858 | 26..898 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:38:48 Download gff for
FMO01611.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dmrt99B-RA | 207..1074 | 17..898 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:10:30 Download gff for
FMO01611.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dmrt99B-RA | 207..1074 | 17..898 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:10:30 Download gff for
FMO01611.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29692797..29692953 | 17..172 | 98 | -> | Plus |
3R | 29693038..29693139 | 173..274 | 100 | -> | Plus |
3R | 29693426..29693837 | 275..689 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:38:48 Download gff for
FMO01611.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25518519..25518675 | 17..172 | 98 | -> | Plus |
arm_3R | 25518760..25518861 | 173..274 | 100 | -> | Plus |
arm_3R | 25519148..25519559 | 275..689 | 99 | -> | Plus |