Clone FMO01611 Report

Search the DGRC for FMO01611

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:16
Well:11
Vector:pMK33-CFH-BD
Associated Gene/Transcriptdmrt99B-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO01611.5prime Sequence

903 bp (855 high quality bases) assembled on 2008-04-11

> FMO01611.5prime
ATAAAAACCAAACTTATCAGTCGACATGAGTCTACCGTCGGGTGTGGACA
TGCAGAATCTGATGTCCCAGCATCCGGTCTTGGGAGCACTGCCACCTGCT
TTCTTCTTGCGAGCCGCCTCGGAACGCTACCAAAGGACGCCCAAGTGCGC
CCGCTGCAGGAACCACGGAGTGGTCAGCGCCTTGAAGGGACACAAACGCT
ACTGCCGCTGGCGGGATTGCGTCTGCGCCAAATGCACTCTAATCGCGGAA
CGCCAAAGGGTTATGGCTGCTCAGGTGGCCCTTCGACGCCAACAGGCCCA
AGAAGAGAACGAGGCCCGCGAGCTGGGCCTGCTCTACACTTCGGTTCCTG
GCCAGCAGAATGGCAGCGACAGTGCTACGCCCACTCCGCACAGCCCCAAC
CACAGCGGCAGCGGCGGCTCGGGCAGCGGAGGATCGGGCCAGAACGGCGT
CTTCCACGGCGGGATTCCCTCGCCACCCAGCGACGGCTTCGAGGCCAGCT
CCACTCCCAATCATCACCAGCAGTCGCAGCAGCAGCAGCAGGCGCACCAC
CAAACAGCACCTTAGCCACCCACACCAGCAGTCCCAGCGGTTTCAATGGC
AATGAATCCGACACGGATGGACGCACCCGTTCCGAGCACCTCAGCGTCGG
GTTTCTCGCCCACCAGAACCGAGCTGGATGAGAGTCCTGTGTCCAAGCGC
GGAGCATCCCCTGTCGAACGAGACCGACCAGGACACGGGTCTCCGAGTCC
GGATCGCCCGAGTAAGTCCCTCGGCCCAAGGGTTGCCGGGACTGTTCAAT
CTGACCGCCGGCTTGTCCGCCCGCCCGCACTGGACCGTCCCAGCTCGTCA
GGAATCGGATTCTGGACGTGGATTCGGGGGCGGATGAGGGCACCCCCGAA
AAA

FMO01611.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:16
Subject Length Description Subject Range Query Range Score Percent Strand
dmrt99B-RA 2350 CG15504-RA 211..1070 20..893 3900 97.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29693423..29693837 272..689 1940 99.3 Plus
3R 32079331 3R 29692801..29692955 20..174 760 99.4 Plus
3R 32079331 3R 29693037..29693143 172..278 535 100 Plus
3R 32079331 3R 29695552..29695745 689..893 375 90.2 Plus
Blast to na_te.dros performed 2014-11-28 20:39:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 5815..5869 239..185 122 69.1 Minus
TART-C 11124 TART-C TARTC 11124bp 7270..7324 239..185 122 69.1 Minus

FMO01611.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:50:20 Download gff for FMO01611.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15504-RA 1..858 26..898 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:38:48 Download gff for FMO01611.5prime
Subject Subject Range Query Range Percent Splice Strand
dmrt99B-RA 207..1074 17..898 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:10:30 Download gff for FMO01611.5prime
Subject Subject Range Query Range Percent Splice Strand
dmrt99B-RA 207..1074 17..898 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:10:30 Download gff for FMO01611.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 29692797..29692953 17..172 98 -> Plus
3R 29693038..29693139 173..274 100 -> Plus
3R 29693426..29693837 275..689 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:38:48 Download gff for FMO01611.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25518519..25518675 17..172 98 -> Plus
arm_3R 25518760..25518861 173..274 100 -> Plus
arm_3R 25519148..25519559 275..689 99 -> Plus