FMO01613.5prime Sequence
1202 bp (1054 high quality bases) assembled on 2008-04-11
> FMO01613.5prime
CAGTCGACATGCATCGGATACATGACGACGAGTATTCCGAGGATGCCAAG
GAATCGGACTTTAAGAGTTCGATTCAGAAGGAGATATCAGTGAAGTCGAG
ACACCAAATTTCCATACCAGACATATGCTCAGATGCTGTTAAGAACAATT
GTTTTCCGCCGACTGGCTTTCTCAATAACTCGATCACCTTTGCCTCACAT
GTAGTTAAGTGCAGCTCACCGGCCTCGAGCATCGATGAATCCTCAACGGC
GGCCCAGCAGCACGAATCCAATCCACACATGCATATACAGGGTCAGCATA
TGATGGCTCCCGTTCCCGATCTGGGTTTCTACAATGTGCCCGAGTTCATA
TCCGAGCAGGAGAAGCTCATGTTCTCCGATGCAGAGAGATTCTTGCGGTC
GAAGGATAATGAGGTGTGCAACAATGATTTCAGCTATATGCACGATGAGT
TCGCCATGCGGAAGTACTATCATCCGTTATTTGCTCATGGCATATGCCGT
TGGCCTGGTTGCGAAATGGATTTGGAAGACATCACATCGTTTGTCAAGCA
TCTGAATACGGAACATGGTTTGGACGATCGATCAACAGCACAGGCACGGG
TTCAAATGCAAGTTGTCTCCCAGCTGGAATCCCACCTGCAAAAAGAACGA
GATCGCTTGCAGGCAATGATGCATCACTTGTATTTGTCCAAGCAGCTTTT
GTCTCCCACCAAAATCGACAGGAAGGACGTGCCCGGAAGAGAGGGAAAGT
TTTGCCGGAGTCCGCTTACCGTAAATAGCATAGGCCGACCCATCCGACAA
ACAAATTCACCGAGTCCTCTGAATCTTCCAATGGTTAATTCCACCAACTT
GTGCTCGATCAAAAAGAGAACCACGACAAAATACATTTTCCATAAATGGG
GGATTACCCTATATGCTTGAAAGAGCAGGTCTTGATGTGCACAGGAAATC
CATCGAAACAGAGAGTTTTATAAGAATGCTGATGTACGACCGTCTTTACT
ATGCTCCCTCAAAGACAGGCTATAATGACTCCCCTGACAGCAGTACCCTA
ACGAATCTACACTGTTCCAAACCTTTTGCTACTCGGCCCACGCAGCTACG
GAAAACGCATCGACATCTGTCCTCCTAAGGCCTAGCGGTGGAATGAGGGA
CCGTTTGACTGTCAGTAGAAATGGTATTTTACACAAGAGAACACCGCGCG
TG
FMO01613.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| FoxP-RC | 3359 | CG43067-RC | 1245..2359 | 7..1100 | 5045 | 97.8 | Plus |
| FoxP-RD | 2832 | CG43067-RD | 1245..2359 | 7..1100 | 5045 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9728894..9729435 | 548..7 | 2710 | 100 | Minus |
| 3R | 32079331 | 3R | 9728658..9728836 | 726..548 | 895 | 100 | Minus |
| 3R | 32079331 | 3R | 9728424..9728605 | 902..723 | 810 | 98.9 | Minus |
| 3R | 32079331 | 3R | 9728184..9728236 | 997..945 | 250 | 98.1 | Minus |
| 3R | 32079331 | 3R | 9728326..9728366 | 941..901 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:17:44 has no hits.
FMO01613.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:50:43 Download gff for
FMO01613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16899-RB | 9..1076 | 7..1061 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:34:38 Download gff for
FMO01613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| FoxP-RD | 9..1076 | 7..1061 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:54 Download gff for
FMO01613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| FoxP-RD | 1245..2312 | 7..1061 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:54 Download gff for
FMO01613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9728321..9728365 | 902..945 | 97 | <- | Minus |
| 3R | 9728425..9728602 | 726..901 | 98 | <- | Minus |
| 3R | 9728659..9728836 | 548..725 | 100 | <- | Minus |
| 3R | 9728159..9728235 | 946..1018 | 93 | <- | Minus |
| 3R | 9728895..9729435 | 7..547 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:34:38 Download gff for
FMO01613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5553881..5553957 | 946..1018 | 93 | <- | Minus |
| arm_3R | 5554043..5554087 | 902..945 | 97 | <- | Minus |
| arm_3R | 5554147..5554324 | 726..901 | 98 | <- | Minus |
| arm_3R | 5554381..5554558 | 548..725 | 100 | <- | Minus |
| arm_3R | 5554617..5555157 | 7..547 | 100 | | Minus |
