FMO01614.5prime Sequence
1235 bp (1020 high quality bases) assembled on 2008-04-11
> FMO01614.5prime
CAGTCGACATGTCGCAGACATGCCAGAGAACGGAAACACTGACGATTGAG
GCTCTAGATTTCATCTACGAGGACGAAATGGAATACTTGCACCTAAAACA
AGCGCCCAGAAAGGAGGAGCAAGTCAAGGCGGTGAAGATAAAGCGACTGA
CTTGCAACATAAACGGCTGCACTTACTCCACGGACCGGAGAAGAGACTTG
AGGCGCCACAGGCGGTCGCAAAAGCACATGCTGCTGGAGTCCTGCTCTGA
CTCCGAGTCTGAGGTGGAATCGTCACTGTTCTCGTGCAACGTCTGCGGCT
ACAAGACCGCCAAACGGTATTGCTTCGACCGGCACAAGGAGTCGAGGCGC
CACATAATGAAGGAGCAGGAGGAGTGCGAGAAGCTGATGGACGAGGCCGA
GAGGGCGGAACCGGCGGTAAAACGCATAAAAAGAGTAGAGGAGCCAGCGC
CCGCGGATGCGGAGAAAACACGATACACGGAAGACATCCTGACCACGTGC
ACGCCGTGTGACTACAGCACCACTCGAAAATCTCAATTCGAGATGCAAGC
AAAAAGCCAGGCGAACATCGAGGTCGTGCAAAGCCAGCTGGAGGCTAATG
AATACATACAGTATCTGCCCCAGGAGCAGGAACAGATGGTGGAGCTATCT
GGGGAGTCTGGGGAGACCGAGGACGAATACCTCGCCTACAAGAAGGAGTG
CAGGTGCACCCTGGAGTGCAAGCCCTGCGAATACAGAACGGCCAGGAGAT
TCTGCTTCGTTCGGCACATGCGATCGGCAAGGCATCTGGCCAAGATTCAA
GCTGACCTTGATGGTCTGGAGGAAACTGAAGCTCTTGAGCCAGTAGAATA
CTTGGAAGCGGAAAATGAGCTGGAGGAGATTGATCACAGAGAGGAGAGAA
ATTTTGTGGAGGAGCTTGATATGGATGTTATGGAAGAGCAGATGTTGTGG
AGGATATACAGGATATAGATCAGCAAGACGGACTGGAAGAGATCATCTAG
TGGAGATCGACGAGTGATCAAATAGATCCGGGCTTTGAAATGATAGAATA
TACACTGCGGAAGAAACGTTTACGAAGGGAGATCGGGTACTGACCACGAG
ACGTCCGGAGGAATATTTCTACTTCATCGGCTGGACATGCACCAGCTTCT
AGACCTGCGTGGCGCGAGCTGCGGCCCTAAGTGGAGTGGGCCTAAACTAA
ATACCGACTCATATCTCAATCCTCACGACAATGAG
FMO01614.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:26:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17186-RA | 1482 | CG17186-RA | 98..1235 | 9..1137 | 5235 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:26:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19876309..19877282 | 1054..85 | 4630 | 99.1 | Minus |
| 3R | 32079331 | 3R | 19877342..19877417 | 84..9 | 365 | 98.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:26:55 has no hits.
FMO01614.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:50:45 Download gff for
FMO01614.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17186-RA | 22..1115 | 9..1097 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:13 Download gff for
FMO01614.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17186-RA | 98..1191 | 9..1097 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:59:25 Download gff for
FMO01614.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17186-RA | 98..1191 | 9..1097 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:59:25 Download gff for
FMO01614.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19876265..19877282 | 85..1097 | 98 | <- | Minus |
| 3R | 19877342..19877417 | 9..84 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:13 Download gff for
FMO01614.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15701987..15703004 | 85..1097 | 98 | <- | Minus |
| arm_3R | 15703064..15703139 | 9..84 | 98 | | Minus |
