FMO01616.5prime Sequence
909 bp (909 high quality bases) assembled on 2008-04-11
> FMO01616.5prime
AAAACCAAGTTATCAGTCGACATGTGTTTGATATGGGCCTGCACCAAGTA
CTTGGCGCGTCGAAATCCAAAGATATTCGTTCGAATCTCCCATCCGACCG
CAGTACTATTCGTAATCGTGACAACGATCTTTTTTGTGGTCCTGCAAATG
TTTTACGTGGTACCCCAATTGTTTGATGTTCAAGGATTCATGTACAAGCT
CGGCTGGCTAGTGGCAATCTTTATAACATATAATATCTTTGGCAATATGC
TTGCGTGTCATATCACAAGCACTTCGGTGGAGAGCCTGCCAAAGGATCGG
CAAATTCCGGAGCCGGAAGAGGAGCACCAGTGGCATTACTGCGATGTTTG
TGAAAAACTAATGCCTCCAAGATCCTGGCACTGTATATTGTGCAAGTGCT
GCATTCTGAAGCGGGACCGCCACTGCATTTTCACTGCCAGTTGCGTCGGA
CACAATAATCAGAGATACTTTTTCTGGTTCACCCTCTTCATGGCTTTGGG
AACTGGTGTGGCCTTGGCTACCCATATTATTGCCACCCTAAAGTATTTTA
GCTATTCGGACCTGATATTCCTAAATATCCCTAGGGATAACTTACCTCCA
TTTTGGCTGGTCATCACTCTTATACTAAACACCTACGTATTTGCAGCCCC
TGTATCTTCGGTGCTTATGCAATTATCTGTACTTAAAAATAATGGCACTT
TGCATAAGTTTTACAGTGATACCTACGATCTGGGCTTGTGGGAGAATTTC
AAGCTGATTTTGGGCGGAAAAGGCTTTTGGACTTTCCTCTCACCCACCGT
TAAGAGTCCTCTGCCCCATGATGGTGCCCAGTGGAAGATCAAACGTGTTC
AGCATCATTCACCAAAATTACAGTTTCTCCGTGTATCCGATGCAAGCTTT
CTAGACCAT
FMO01616.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:40:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17197-RB | 1958 | CG17197-RB | 89..958 | 22..891 | 4350 | 100 | Plus |
| CG17198-RB | 1958 | CG17198-RB | 89..958 | 22..891 | 4350 | 100 | Plus |
| CG17196-RC | 881 | CG17196-RC | 221..412 | 286..477 | 465 | 82.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:40:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25774458..25775281 | 845..22 | 4120 | 100 | Minus |
| 3R | 32079331 | 3R | 25775757..25775948 | 477..286 | 465 | 82.8 | Minus |
| 3R | 32079331 | 3R | 25774334..25774380 | 891..845 | 235 | 100 | Minus |
| 3R | 32079331 | 3R | 25776727..25776842 | 482..367 | 220 | 79.3 | Minus |
| 3R | 32079331 | 3R | 25777733..25777835 | 464..362 | 215 | 80.6 | Minus |
| 3L | 28110227 | 3L | 16861157..16861246 | 370..459 | 210 | 82.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:40:23 has no hits.
FMO01616.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:50:50 Download gff for
FMO01616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17197-RA | 1..824 | 22..845 | 100 | -> | Plus |
| CG17197-RA | 903..951 | 846..894 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:41:08 Download gff for
FMO01616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17197-RB | 89..958 | 22..891 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:29:32 Download gff for
FMO01616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17198-RB | 89..958 | 22..891 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:29:32 Download gff for
FMO01616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25774334..25774379 | 846..891 | 100 | <- | Minus |
| 3R | 25774458..25775281 | 22..845 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:41:08 Download gff for
FMO01616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21600056..21600101 | 846..891 | 100 | <- | Minus |
| arm_3R | 21600180..21601003 | 22..845 | 100 | | Minus |
