FMO01618.5prime Sequence
1187 bp (993 high quality bases) assembled on 2008-04-11
> FMO01618.5prime
AAAACAAAGTTATCAGTCGACATGGACTATAATATCCACAAAATATGCAG
AGTTTGCCTGGAGGAACTACATCCTGTAACTTCGATATATAGTACAGACT
TTGCTATGATGCCCTCCGTAATGTTGATGCAATGCGCTAAAATAAGAGTT
TTTAAAACCGATGGCCTACCTTCGGTGATCTGCAACAACTGTATTTACCG
GCTGGGGGTGGCCTTCCACTTCAAGCAGGAATGCGAAAACAGTGATCTCC
GACTGCGACAATATCTGGGCATTCTGGAATCCTGGCGCCAGGATGCGGCC
ACCAATACGGACTTTGTGGAGAAGCCGTTGCTTCCGCAGCGCGATAGCGA
TGAAGAGGAACCCGTGGATGCCAAAGTGAGCAAGAGGCGGTCGCGCTATC
AAAGGAAGCCGCCAGAAGAGCACAAAAAACGGGGGCCCAAACCTGTGCCA
AAGATGCCCCACACCTGCTACGAGTGCCACAAAAGCTTTAAGTGCATTGC
CCAATTAACACAGCATATAAGAACACATACCGGCGAGAAACCCTACCAAT
GCAGCTTTTGTATCCAGAGATTCGCACAAAAGTACAATCTTAAAGTCCAC
GAAAGAACGCACACGGGCGACAAGCCTTTTCAGTGTGAGATCTGCTCCAA
GCAGTTTTCCGCGTTGGGCAATTTCCAGGCGCACCAGAAGATTCATTTAG
GAGTGCGGGATCAGGTATGCTCGCTATGTCAGAAGGTTTCTACACCGCCG
GTGATCTCTCCAAGCACATGATAACCCATACGGGCATCAAAAACCATCAC
TGCGATGTCTGCGGCAAGGCTTTCAGCAGCGAAGAGATATGCGGACTCAT
AAATTGAAGCTTCATCCTCTGGAGTCCAGTACAAACCATGATATAGTGGA
CGATGATGATGATGAGGCTATAGACACGGATCCCGTGGGTCTGGACACCC
CTCGATCACGCCCACTTCAAGTGTCCGATGCGACAAGCATTTGATACGCG
ACGCTAGTCTACATTTCGCAACACATGCGCGAATAATATCTACTGATTGC
GTGCTCTGCCCACTATGTCCATCCCTACATCACGATGCACTGCATCATCC
GACCCCGATTCCGCCCAACAAATGGATGCGCAATGGATCCCTGTTGAACC
GGGCGGCCCTCACGCCAAGCCCAAATGCGAAGGGGCA
FMO01618.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:40:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17328-RA | 1496 | CG17328-RA | 96..1196 | 20..1099 | 4750 | 96.8 | Plus |
| CG17328-RB | 1346 | CG17328-RB | 64..1046 | 138..1099 | 4115 | 96.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:40:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16300493..16301323 | 148..977 | 3890 | 98.7 | Plus |
| 2L | 23513712 | 2L | 16300309..16300438 | 20..149 | 650 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:40:36 has no hits.
FMO01618.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:50:55 Download gff for
FMO01618.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17328-RA | 57..1015 | 20..977 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:41:17 Download gff for
FMO01618.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17328-RA | 96..1054 | 20..977 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:29:40 Download gff for
FMO01618.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17328-RA | 96..1054 | 20..977 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:29:40 Download gff for
FMO01618.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16300309..16300436 | 20..147 | 100 | -> | Plus |
| 2L | 16300493..16301323 | 148..977 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:41:17 Download gff for
FMO01618.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16300309..16300436 | 20..147 | 100 | -> | Plus |
| arm_2L | 16300493..16301323 | 148..977 | 98 | == | Plus |
