FMO01619.5prime Sequence
874 bp (874 high quality bases) assembled on 2008-04-11
> FMO01619.5prime
AAAAAACAAAGTTATCAGTCGACATGGCGGGCATGGAGGTAGAATTCGAC
GAGACGGTGGCCAATCAGTTCAGCTGCAAGCGCTGCGACCGAACCTTCAG
AAGCAAGCGGGATCAGACGTTGCATCGACAAGAGGTGCACAACCACAACA
AGACCACCTACGAGTGCAAGCTGTGCGCGAAGAGCTTCTGCAATTCGGGG
AACCTGGATCGTCACATGAAGGTGCACAACGATGTGCGGCCCTTCGTGTG
TAACATTTGCTCGAAGGCCTTCGCCCAGGCTGTGAACCTGCAGCGCCACT
ATGCGGTGCACAGCGGGGAGCGGCCATTCACCTGTAACTTCTGCAACAAG
TCCTTCACCCAGCAGAGCAACATGAAGCGCCACAAGATGACACACACTGG
CGAGAAGCCGTTCCGCTGCCAGCGATGCGGCAGGTACTTTTCCCAGCTGG
TCAACCTCAAGAAACACAAGCTTGGCCACCTCAACGCCAAGCCCTACCAG
TGTAATTACTGCGAGAAGGGCTTCACCCAGCTGTCAAACTTTAAGCGCCA
CTTGCAGTCGCACATAAAGGAGGGCGTCGATGTGGACGTGCCCGCCTCTA
TCCAGGCGGCTGCCGCCCTGGCCAGGGAACGGCTTGAGTCGGAGCAGAAA
CCAAGCTTTTTCGAATGCATGGTGTGTCGGGCCATCTTTGATACCTTCGC
TGACTATGAGAAGCACGAAGCCAAGTGCCATGAGGACCACGAAAGGGCCC
AGCTGGAGGTTAACCAGATGTCCCACATGCATCCAGACGACTATTTGCCC
ATGAAGTTTGCCGTGCCCGATCTGGATACGCACGAAATCATATTGAGACT
ACACATGCAAGCTTTCTAGACCAT
FMO01619.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17385-RB | 1853 | CG17385-RB | 158..995 | 20..856 | 4105 | 99.4 | Plus |
| CG17385-RA | 1192 | CG17385-RA | 158..995 | 20..856 | 4105 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14410725..14411284 | 652..93 | 2755 | 99.5 | Minus |
| 2R | 25286936 | 2R | 14410214..14410418 | 856..653 | 975 | 99.5 | Minus |
| 2R | 25286936 | 2R | 14411343..14411415 | 92..20 | 350 | 98.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:39:38 has no hits.
FMO01619.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:50:57 Download gff for
FMO01619.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17385-RA | 1..837 | 24..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:38:57 Download gff for
FMO01619.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17385-RA | 158..995 | 20..856 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:10:39 Download gff for
FMO01619.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17385-RA | 158..995 | 20..856 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:10:39 Download gff for
FMO01619.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14411343..14411422 | 16..92 | 93 | <- | Minus |
| 2R | 14410214..14410418 | 653..856 | 99 | <- | Minus |
| 2R | 14410725..14411284 | 93..652 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:38:57 Download gff for
FMO01619.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10297719..10297923 | 653..856 | 99 | <- | Minus |
| arm_2R | 10298230..10298789 | 93..652 | 99 | <- | Minus |
| arm_2R | 10298848..10298927 | 16..92 | 93 | <- | Minus |
