FMO01620.5prime Sequence
1196 bp (1001 high quality bases) assembled on 2008-04-11
> FMO01620.5prime
CAGTCGACATGACGGACGGCAGCCACTGGTTGAACTGGTGTCGCCTGTGC
GCCAAGGACGACGCCCACGGCAATGTGAAGGTGCAAATGAATGAGAATTC
TCAGGGAAACTGGGACAATGTCCTGATAATGGCCATTCGCAAGTACTTCG
AAGTGCAAATGCAACTGGAGGACGAGCTAAGCAGCGTGCTGTGTACGGAG
TGCTATACGCTTATTAGCGAACTAATCGATTTTGCAGAGCATGTGACCAA
AGTGCAAGACATCTTTGAGGTCCTGCGGCGAACAGAAACAGATGGGGACC
AGGAAATGGACGTGGCTGCACTGCGTCAGCAGTTTGGACTGTGCGATGAC
GACTGGACGCACATTATAAAGCCAATTCCTGCTCTTGAAATGGAGTCCGA
TAATGTTTATCAAAAACCCGCCGAACTATTAAAGGACTTTCCTTTGGCGG
AGACAAGCAGCCAAGAAATGGAAATATCGAAAAGGACAACAACAACCCAC
TTAATTCAAACCAAAAAGAACGTAGAAATGGAGATACCCAAGCAAGAATT
CATCGACTTAGGTCCCATTCTGTTGGAAAAGAACACAAGTCAACTGGACA
TGGAGGATGTGCTAGACGAACTGCCTCAGGAGGAACTATCGCAACCGCGC
CTCGACAGCACAACCTCTCCGGCCTCAATGGAGAATGATGTCAAATCAGA
AATGCTTGACAGCTGTGAAGGAGACGACGATTTCCTGCCCGTAGATGGCC
AGCTAATGGATCTCGTCGCTGTGGCAACCACGCCAAATACTCTGGAATCA
ACTGCCGAGGAGAAGGCCAAACGGGGTCGAATGGACTGCGAGAAATGTGG
CAAGGTCTACAGAAACCGCGCTTCATACGAGAAACACTTGGAACGCGAGT
GCCGCCGGATCGAGCGGCGTGTGAAAGTGGACAAAACAACAACACCTGTG
ATATTGCAACAAACGCTATCCTCGCACAGCGCTGAGCTCACAAGAGGGCA
TAACCAGATGTCAGCATATATCTGCGATAGTTGCGGCAGCAACTGAGACA
ATAACGCACTAATGAACCAGCTGGTCACACGAAAGCGTCCCTTCGAGTGC
CACGGTCTGCAGCGGCCTTAGAATCGGCTTCGCTAAGCCATACATTCAGC
GACCAATCCGTGCTACAATTGCGGCCAGAAGCCGTGCAAAGCCGTG
FMO01620.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:34:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17568-RA | 1839 | CG17568-RA | 100..1242 | 9..1127 | 5060 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:34:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19180599..19181396 | 955..159 | 3940 | 99.9 | Minus |
| 2L | 23513712 | 2L | 19181454..19181603 | 158..9 | 750 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:34:38 has no hits.
FMO01620.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:50:58 Download gff for
FMO01620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17568-RA | 100..1247 | 9..1132 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:49 Download gff for
FMO01620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17568-RA | 100..1247 | 9..1132 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:03:10 Download gff for
FMO01620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17568-RA | 100..1247 | 9..1132 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:03:10 Download gff for
FMO01620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19180399..19181396 | 159..1132 | 96 | <- | Minus |
| 2L | 19181454..19181603 | 9..158 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:49 Download gff for
FMO01620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19180399..19181396 | 159..1132 | 96 | <- | Minus |
| arm_2L | 19181454..19181603 | 9..158 | 100 | | Minus |
