FMO01621.5prime Sequence
1216 bp (1014 high quality bases) assembled on 2008-04-11
> FMO01621.5prime
CAGTCGACATGGCCACCACAAACAGCCAGAGCCACTACAGCTACGCCGAC
AACATGAACATGTACAACATGTATCACCCCCACAGCCTGCCGCCCACCTA
CTACGATAATTCAGGCAGCAATGCCTACTATCAGAACACCTCCAATTATC
AGGGCTACTATCCCCAGGAGAGTTACTCGGAGAGCTGCTACTACTACAAC
AATCAGGAGCAGGTGACCACCCAGACTGTACCGCCCGTGCAACCCACCAC
CCCGCCGCCCAAGGCCACCAAGCGCAAGGCCGAAGATGATGCTGCTTCCA
TCATCGCCGCCGTGGAGGAGCGACCCAGCACACTGAGGGCTCTGCTCACC
AATCCCGTGAAGAAGCTGAAGTACACCCCCGACTATTTCTACACAACCGT
CGAGCAGGTGAAGAAGGCTCCCGCCGTAAGCACCAAGGTCACCGCCAGCC
CCGCTCCCAGCTACGACCAAGAGTACGTGACTGTGCCCACGCCCAGCGCC
TCCGAGGATGTCGACTACTTGGACGTCTACTCGCCCCAGTCGCAGACGCA
GAAGCTGAAGAATGGCGACTTTGCCACCCCTCCGCCAACCACGCCCACCT
CTCTGCCGCCCCTCGAAGGCATCAGCACGCCACCCCAATCGCCGGGGGAG
AAATCCTCGTCAGCTGTCAGCCAGGAGATCAATCATCGAATTGTGACAGC
CCCGAATGGAGCCGGCGATTTCAATTGGTCGCACATCGAGGAGACTTTGG
CATCAGATTGCAAAGACTCGAAACGCACCCGTCAGACGTACACCCGCTAC
CAGACCCTGGAGCTCGAGAAAGGAGTTCCACTTCAATAGATACATCACCC
GGCGTCGTCGCATCGATATCGCCATGCCCTGAGCCTGAGCGAAAGGCAGA
TCAGGATCTGGTTCCAAAACCGACGCATGAAGTCGAAGAGATCGCACGCT
GGACAGCTCCCCGGAGCACTGTGTGCCGGCTACACCGCGATGCTGCCGCA
CTGGAGGCACAGCACGGCACCACGGGGCACCATCGGTGCAGTGCCATGTA
CCACCACCACCAAACACGCCCGCCTTACCCCGCTAAGCCCAGTCAAGTCA
TTGGTTGGGCTGTATAATACCCTCAGACGGATCCCCAGCAGATACATGCT
ACCGGGAGCGTTCAATCTAGGCAACACAGGTAACTTCCAAGAAACCCTCT
TCAGTCACGCTCGTAC
FMO01621.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:34:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ftz-RA | 1774 | CG2047-RA | 67..1177 | 5..1101 | 5050 | 97.9 | Plus |
| Scr-RB | 3987 | CG1030-RB | 1462..1612 | 789..939 | 350 | 82.9 | Plus |
| Scr-RA | 4140 | CG1030-RA | 1615..1765 | 789..939 | 350 | 82.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:34:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6864390..6865141 | 5..756 | 3745 | 99.9 | Plus |
| 3R | 32079331 | 3R | 6865286..6865607 | 754..1065 | 1025 | 95 | Plus |
| 3R | 32079331 | 3R | 6825495..6825645 | 939..789 | 300 | 82.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:34:45 has no hits.
FMO01621.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:51:00 Download gff for
FMO01621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2047-RA | 63..1156 | 1..1084 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:53 Download gff for
FMO01621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ftz-RA | 63..1156 | 1..1084 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:03:13 Download gff for
FMO01621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ftz-RA | 63..1156 | 1..1084 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:03:13 Download gff for
FMO01621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6864386..6865141 | 1..756 | 99 | -> | Plus |
| 3R | 6865289..6865607 | 757..1065 | 95 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:53 Download gff for
FMO01621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2690108..2690863 | 1..756 | 99 | -> | Plus |
| arm_3R | 2691011..2691329 | 757..1065 | 95 | == | Plus |
