FMO01622.5prime Sequence
1220 bp (1012 high quality bases) assembled on 2008-04-11
> FMO01622.5prime
AAAACCAAGTTATCAGTCGACATGGCCTGGCTACCGAGCAGCTCGAACGG
AGCGGATAACGCGGACGAACGGAGCACCGCCTCGAGCGGATCCTCCGGCC
ACAGCCAGACCAACGAGTCACCGCGATCCGGGCACCTGAACGGTAATGGT
AGCATGCGGGACACTGCCGCTGGCAGGCATCCGCCCGCCCTGCTCCGACA
TGCCACGCCCCACCTGCAGCCCAAGACGGAGTCCATATCCGATGGAGACG
GTGACGCGGAGCTTTCCGACTTCTCGCTCAACGACACGGAGGAGGACGAG
GAGGATCTTCGCGATTACATCGTTCTGAATGGCAACCAGGCGGATGCGAA
TCGCTCACTGTCCAGTTCGCCGCGCAGTCACTCCCGCAACGGACTGCTGA
CCGCGCCGGCCAGCTCCGGAAGCTCAGTCGGCGGTAGCGGCGGTGGTGGA
GGCAATGGCTCCGGCGGCAATGCATCCAGTGGCGGCGGCAGCGGCGTAGG
AGCCACCGGCGGTGTGCGCAAGGTGTTCACCAACACAAGGGAGCGATGGC
GCCAGCAGAACGTGTCCGGTGCCTTTGCAGAGCTGCGCAAGCTGGTGCCC
ACACATCCGCCGGACAAGAAGCTATCGAAGAACGAGATCCTGCGCTCGGC
CATTAAGTACATTAAGCTGCTGACGGGCATCCTCGAGTGGCAGCAGCGGC
AGGCGCCCTCGCATCCGATCAGGGCTCAAATGGAGCCGAACAACAACGAC
AATAGGATGGCCAATGGCCATGCGGCGGACGGGGAGAATCTGGAGAATCC
AGATGTTCCGCCTGTACGGCACATCAAGTGTGAACGCACCGACGGGCAGA
TGCACAGGAATGGCATTGGGCACGGACATGCCAACGGAAACGCTGGCAAC
GACCTGCTGATGATTGCCCCGGGAGCCGTGTCAAAGCGAGCTCTCTGAGT
CTACACTCCCACTTGGGCATCCGTTAACGCCAACCCTGCGTGACCACTGC
TCCGCTGGCCATGGACGAAACTCAGGATTCATGCACCGTAATCGGTGGTA
AATCGTCAGCGACGGATAGCAGCGACGCCCTCAGCGGAAAGGGGAACTCG
ACTCAGTCTGGGCAACGGCAGAACGTAGCTTTCTAGACATTCGTCTGGCG
CGGCCAGTATGCTATCTATATCATATCTAGCTAGATGCCACCATGCCTGG
AGAAACCCGTCCGAGTACAT
FMO01622.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:48:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HLH3B-RA | 1428 | CG2655-RA | 66..1180 | 22..1115 | 4830 | 96.8 | Plus |
| HLH4C-RB | 1424 | CG3052-RB | 563..632 | 572..641 | 230 | 88.6 | Plus |
| HLH4C-RA | 1424 | CG3052-RA | 563..632 | 572..641 | 230 | 88.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:48:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2680548..2681237 | 1025..346 | 2990 | 97.2 | Minus |
| X | 23542271 | X | 2681334..2681658 | 346..22 | 1625 | 100 | Minus |
| X | 23542271 | X | 4645919..4645988 | 641..572 | 230 | 88.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:48:21 has no hits.
FMO01622.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:50:37 Download gff for
FMO01622.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2655-RA | 57..1068 | 12..1014 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:19 Download gff for
FMO01622.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HLH3B-RA | 57..1068 | 12..1014 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:40:46 Download gff for
FMO01622.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HLH3B-RA | 57..1068 | 12..1014 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:40:46 Download gff for
FMO01622.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2680559..2681236 | 347..1014 | 98 | <- | Minus |
| X | 2681334..2681658 | 22..346 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:19 Download gff for
FMO01622.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2574592..2575269 | 347..1014 | 98 | <- | Minus |
| arm_X | 2575367..2575691 | 22..346 | 100 | <- | Minus |
