FMO01624.5prime Sequence
541 bp (541 high quality bases) assembled on 2008-04-11
> FMO01624.5prime
AAAAACGAAGTTATCAGTCGACATGGTCTACGATATGAGCCATATGGCGG
CGGGTCCGCCGCAAAGCATTTCGCTTAGTCGCTACTATCTGGTCGACGAT
GATGAGATGATTGGGCCAAATAATCCGCATCTGGTCAACGAGGACTATGC
GGCCAGTACGACGCTGGATATCGATAAGCGTTTTCAGGCGCGAATGGCGT
GCGAAACGGCCGCACAACCGGCACCGCCACCGCCGCCCACGCCGGCGCCA
CGTCGCCGGACCACGCCCATTGCCCATTTGGATCCATCGGAATTGGTGGG
TCTATCGCGGGAGGAGCGGCGTCGTCGCAGGCGAGCGACACTCAAATACC
GAACGGCACATGCGACGCGGGAGCGTATACGGGTGGAGGCATTCAATGTT
TCCTTTGCCGAGCTGCGCAAGCTGTTGCCCACATTGCCGCCGGACAAGAA
GCTTTCCAAGATCGAGATCCTCAAGCTGGCCATCTGCTACATTGCCTATT
TGAATCATGTGCTGGAGACGCCCGCAAGCTTTCTAGACCAT
FMO01624.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HLH4C-RB | 1424 | CG3052-RB | 184..684 | 23..523 | 2505 | 100 | Plus |
| HLH4C-RA | 1424 | CG3052-RA | 184..684 | 23..523 | 2505 | 100 | Plus |
| HLH3B-RA | 1428 | CG2655-RA | 616..685 | 402..471 | 230 | 88.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4645867..4646367 | 523..23 | 2505 | 100 | Minus |
| X | 23542271 | X | 2680942..2681011 | 471..402 | 230 | 88.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:29:22 has no hits.
FMO01624.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:50:41 Download gff for
FMO01624.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3052-RA | 178..684 | 15..523 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:50:53 Download gff for
FMO01624.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HLH4C-RA | 178..684 | 15..523 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:16 Download gff for
FMO01624.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HLH4C-RA | 178..684 | 15..523 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:16 Download gff for
FMO01624.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4645867..4646373 | 15..523 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:50:53 Download gff for
FMO01624.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4539900..4540406 | 15..523 | 99 | | Minus |
