Clone FMO01625 Report

Search the DGRC for FMO01625

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:16
Well:25
Vector:pMK33-CFH-BD
Associated Gene/TranscriptRpb4-RF
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO01625.5prime Sequence

458 bp (458 high quality bases) assembled on 2008-04-11

> FMO01625.5prime
ATTATACGAAGTTATCAGTCGACATGTCTTTTATGAACCCCGTGGATATG
GTGGATGAGGACGCCGCCGACCTGCAGTTTCCCAAAGAGTTCGAAAATGC
CGAGACGCTGCTGATATCGGAGGTGCACATGCTTCTCGATCACCGAAAGC
GACAAAACGAATCCGCCGACGAGGAGCAAGAGTTCTCCGAGGTCTTCATG
AAGACCTACGCCTACACAGATAGTTTTCGAAAGTTCAAAAACAAGGAGAC
GATAATGTCTGCGCGAAGCTTGCTGATGCAGAAAAAGCTGCACAAATTCG
AACTGGCCGCACTGGGTAATTTGTGTCCGGAGGCGCCCGAGGAGGCCAAG
GCGCTGATTCCTTCACTAGAGGGTCGCTTCGAGGATGAGGAGCTGCGCCA
AATACTCGACGATATCGGCACTAAACGCAGCTTACAATACGCAAGCTTTC
TAGACCAT

FMO01625.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:54:05
Subject Length Description Subject Range Query Range Score Percent Strand
Rpb4-RF 722 CG43662-RF 108..524 24..440 2025 99 Plus
Ada2a-RE 2385 CG43663-RE 1833..2187 86..440 1715 98.9 Plus
Ada2a-RC 2340 CG43663-RC 1788..2142 86..440 1715 98.9 Plus
Ada2a-RE 2385 CG43663-RE 108..171 24..87 320 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:54:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18253275..18253457 268..86 870 98.4 Minus
3R 32079331 3R 18253041..18253214 440..267 855 99.4 Minus
3R 32079331 3R 18255317..18255380 87..24 320 100 Minus
Blast to na_te.dros performed on 2014-11-28 19:54:04 has no hits.

FMO01625.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:51:06 Download gff for FMO01625.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33520-RC 1767..2124 87..448 97   Plus
CG33520-RC 70..147 10..86 93 -> Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:05 Download gff for FMO01625.5prime
Subject Subject Range Query Range Percent Splice Strand
Rpb4-RF 93..529 10..448 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:15 Download gff for FMO01625.5prime
Subject Subject Range Query Range Percent Splice Strand
Rpb4-RF 93..529 10..448 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:15 Download gff for FMO01625.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 18253036..18253212 269..448 97 <- Minus
3R 18253275..18253455 88..268 98 <- Minus
3R 18255317..18255395 10..87 93   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:05 Download gff for FMO01625.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14078758..14078934 269..448 97 <- Minus
arm_3R 14078997..14079177 88..268 98 <- Minus
arm_3R 14081039..14081117 10..87 93   Minus