FMO01625.5prime Sequence
458 bp (458 high quality bases) assembled on 2008-04-11
> FMO01625.5prime
ATTATACGAAGTTATCAGTCGACATGTCTTTTATGAACCCCGTGGATATG
GTGGATGAGGACGCCGCCGACCTGCAGTTTCCCAAAGAGTTCGAAAATGC
CGAGACGCTGCTGATATCGGAGGTGCACATGCTTCTCGATCACCGAAAGC
GACAAAACGAATCCGCCGACGAGGAGCAAGAGTTCTCCGAGGTCTTCATG
AAGACCTACGCCTACACAGATAGTTTTCGAAAGTTCAAAAACAAGGAGAC
GATAATGTCTGCGCGAAGCTTGCTGATGCAGAAAAAGCTGCACAAATTCG
AACTGGCCGCACTGGGTAATTTGTGTCCGGAGGCGCCCGAGGAGGCCAAG
GCGCTGATTCCTTCACTAGAGGGTCGCTTCGAGGATGAGGAGCTGCGCCA
AATACTCGACGATATCGGCACTAAACGCAGCTTACAATACGCAAGCTTTC
TAGACCAT
FMO01625.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:54:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpb4-RF | 722 | CG43662-RF | 108..524 | 24..440 | 2025 | 99 | Plus |
Ada2a-RE | 2385 | CG43663-RE | 1833..2187 | 86..440 | 1715 | 98.9 | Plus |
Ada2a-RC | 2340 | CG43663-RC | 1788..2142 | 86..440 | 1715 | 98.9 | Plus |
Ada2a-RE | 2385 | CG43663-RE | 108..171 | 24..87 | 320 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:54:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18253275..18253457 | 268..86 | 870 | 98.4 | Minus |
3R | 32079331 | 3R | 18253041..18253214 | 440..267 | 855 | 99.4 | Minus |
3R | 32079331 | 3R | 18255317..18255380 | 87..24 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:54:04 has no hits.
FMO01625.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:51:06 Download gff for
FMO01625.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33520-RC | 1767..2124 | 87..448 | 97 | | Plus |
CG33520-RC | 70..147 | 10..86 | 93 | -> | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:05 Download gff for
FMO01625.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpb4-RF | 93..529 | 10..448 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:15 Download gff for
FMO01625.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpb4-RF | 93..529 | 10..448 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:15 Download gff for
FMO01625.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18253036..18253212 | 269..448 | 97 | <- | Minus |
3R | 18253275..18253455 | 88..268 | 98 | <- | Minus |
3R | 18255317..18255395 | 10..87 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:05 Download gff for
FMO01625.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14078758..14078934 | 269..448 | 97 | <- | Minus |
arm_3R | 14078997..14079177 | 88..268 | 98 | <- | Minus |
arm_3R | 14081039..14081117 | 10..87 | 93 | | Minus |