FMO01627.5prime Sequence
925 bp (925 high quality bases) assembled on 2008-04-11
> FMO01627.5prime
CAGTCGACATGGCTCCCACAACCAGTCCGCCACCCAAGCTGGCCAAGTTC
AAGTCCTCGTCGCTGGACCACGAGATCTACACGGCCAATCGCCGCGGCAC
CATTGCAACGGCCTCCAGCGACTGGAAGGCGCTCCGCGGAGGCGTCGGTG
GAGGAGCAGGAGGACCCGGTAGCGTACCCAATCCCTCTAACGGACGCTCC
CTTCACGCCGGCGGACCCATGACACGGGCCGCCTCCACATCCTCGCTGGC
TAGCAGTACGCGCACGATGACTAACTACCAGGAGTACAAAATGGATATCA
TCAACCAGGGGAAATGTCTGTGTGGTCAGTACATCAGAGCGCGGCTGCGA
CGGGCAGGAGTCCTCAACCGGAAGGTGACACAGCGTTTGCGCAACATCCT
GGACCCCGGCTCCTCGCACGTGGTCTATGAAGTTTTCCCGGCACTGAACA
GCATGGGCGAGGAACTGGAGCGGATGCACCCGCGGGTGTACACAAACATA
TCGCGACAGCTGTCGAGGGCCCCGTTTGGCGAGCTGGAGGACAGCGACAT
GGCGCCCATGTTGCTCAACCTAGTTGCCAAGGATCTTTTTCGCTCCAGCA
TCACCTGGGGCAAGATAATCTCGATATTTGCCGTATGCGGCGGCTTTGCC
ATAGACTGCGTGCGCCAGGGACATTTCGACTACCTACAGTGCCTGATTGA
CGGTCTGGCTGAGATCATAGAGGACGACCTGGTCTACTGGCTGATCGACA
ACGGCGGATGGTTGGGCCTGTCGCGGCACATCCGACCCCGGGTCGGCGAA
TTTACGTTCTTGGGATGGTTGACGCTGTTCGTGACTATCTCTGCAGGCGC
ATATATGGTCTCAAACGTGTGTCGGCGCATTGGAGGTCAACTGTATTCGC
TGCTGTTCGCAGCTTTCTAGACAAT
FMO01627.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Debcl-RA | 1724 | CG33134-RA | 625..1525 | 8..908 | 4475 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6652188..6652643 | 453..908 | 2280 | 100 | Plus |
| 2R | 25286936 | 2R | 6649278..6649579 | 8..309 | 1480 | 99.3 | Plus |
| 2R | 25286936 | 2R | 6651985..6652132 | 305..452 | 740 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:11:42 has no hits.
FMO01627.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:51:08 Download gff for
FMO01627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33134-RA | 531..1444 | 1..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:25:46 Download gff for
FMO01627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| debcl-RA | 618..1531 | 1..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:27 Download gff for
FMO01627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Debcl-RA | 618..1531 | 1..915 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:27 Download gff for
FMO01627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6649271..6649578 | 1..308 | 98 | -> | Plus |
| 2R | 6651989..6652132 | 309..452 | 100 | -> | Plus |
| 2R | 6652188..6652649 | 453..915 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:25:46 Download gff for
FMO01627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2536776..2537083 | 1..308 | 98 | -> | Plus |
| arm_2R | 2539494..2539637 | 309..452 | 100 | -> | Plus |
| arm_2R | 2539693..2540154 | 453..915 | 99 | | Plus |
