FMO01628.5prime Sequence
1216 bp (1062 high quality bases) assembled on 2008-04-11
> FMO01628.5prime
AAAACCAAGTTATCAGTCGACATGATGACCACGACGACCTCGCAGCACCA
TCAGCACCATCCAATCATGCCGCCAGCCATGCGCCCCGCCCCCGTTCAGG
AGAGTCCTGTCTCACGCCCCCGCGCCGTCTACAGCATCGATCAGATCCTG
GGCAATCAGCACCAGATCAAGCGCAGTGATACACCCAGCGAAGTGCTGAT
TACGCATCCCCACCACGGCCATCCGCATCACATCCATCATTTGCACAGCA
GCAATAGCAACGGCAGCAATCACTTGTCGCATCAGCAGCAGCAGCAGCAC
TCGCAACAGCAACACCATTCGCAGCAGCAGCAGCAGCAGCAACAATTGCA
GGTTCAGGCCAAACGAGAGGACTCCCCAACGAATACGGACGGCGGCCTGG
ACGTGGATAACGACGACGAGCTGTCCTCCAGTCTGAACAATGGCCATGAT
CTCAGCGATATGGAGAGGCCGCGTAAAGTTCGAAGATCTCGCACAACATT
TACAACATTTCAATTGCATCAGCTGGAGCGAGCCTTCGAGAAGACCCAGT
ATCCCGATGTTTTCACAAGGGAGGATCTGGCCATGCGATTGGATTTGAGC
GAAGCACGCGTGCAGGTGTGGTTCCAGAACCGTCGGGCTAAATGGCGCAA
ACGTGAGAAGTTTATGAATCAGGACAAGGCCGGTTACCTTCTGCCCGAAC
AAGGTCTGCCGGAGTTTCCGCTGGGCATTCCCCTGCCGCCACATGGACTT
CCGGGTCATCCGGGCTCGATGCAGTCGGAGTTCTGGCCCCCGCACTTTGC
CCTCCACCAGCACTTTAATCCCGCTGCAGCCGCTGCCGCCGGCTTGCTGC
CCAGCACCTGATGGCGCCCCACTACAAGCTGCCCAACTTCCACACCCTGC
TCTCCCAGTACATGGGCCTGAGCAATCTGAATGGGATCTTTGGCGCGGGA
GCAGCTGCAGCAGCGGCGGCAGCATCGGCCGGCTATCCGCAGAATCTATC
GCTGCACGCAGGACTCTCTGCGATGAGCCAGTAGCCGCCGTGCAGCACAG
CAGTCCGCCGCGAGAGTCCAAGCTAGTGCCTCATTCCCCACCGCCGCCAT
GCACGCCCCAAGCGGGCGGCTACGAGGCGGCGACTGTTACGGGGATTGAA
TTCCAAGCGCCAAATCCGAACGCCGGAGGTCAACGCAGCCCTCCAACCCG
TCTCGGTACCCTAGGC
FMO01628.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:31:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hbn-RA | 1798 | CG33152-RA | 323..1439 | 22..1132 | 5285 | 98.7 | Plus |
| repo-RA | 2996 | CG31240-RA | 1286..1387 | 549..650 | 225 | 82.5 | Plus |
| CG34340-RF | 2989 | CG34340-RF | 807..915 | 542..650 | 215 | 79.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:31:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20955036..20955463 | 1124..702 | 1695 | 96.3 | Minus |
| 2R | 25286936 | 2R | 20958539..20958846 | 485..178 | 1540 | 100 | Minus |
| 2R | 25286936 | 2R | 20960431..20960587 | 178..22 | 785 | 100 | Minus |
| 2R | 25286936 | 2R | 20958258..20958391 | 617..484 | 670 | 100 | Minus |
| 2R | 25286936 | 2R | 20955686..20955780 | 705..611 | 475 | 100 | Minus |
| 3R | 32079331 | 3R | 18237892..18237993 | 549..650 | 225 | 81.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:31:43 has no hits.
FMO01628.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:51:09 Download gff for
FMO01628.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33152-RA | 315..1452 | 16..1143 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:10 Download gff for
FMO01628.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hbn-RA | 315..1452 | 16..1143 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:01:45 Download gff for
FMO01628.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hbn-RA | 315..1452 | 16..1143 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:01:45 Download gff for
FMO01628.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20955014..20955461 | 704..1143 | 96 | <- | Minus |
| 2R | 20955688..20955775 | 616..703 | 100 | <- | Minus |
| 2R | 20958260..20958389 | 486..615 | 100 | <- | Minus |
| 2R | 20958539..20958845 | 179..485 | 100 | <- | Minus |
| 2R | 20960431..20960595 | 16..178 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:10 Download gff for
FMO01628.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16842519..16842966 | 704..1143 | 96 | <- | Minus |
| arm_2R | 16843193..16843280 | 616..703 | 100 | <- | Minus |
| arm_2R | 16845765..16845894 | 486..615 | 100 | <- | Minus |
| arm_2R | 16846044..16846350 | 179..485 | 100 | <- | Minus |
| arm_2R | 16847936..16848100 | 16..178 | 98 | | Minus |
