FMO01629.5prime Sequence
1224 bp (1076 high quality bases) assembled on 2008-04-11
> FMO01629.5prime
ATAATACGAAGTTATCAGTCGACATGCTGCCCAATGCGAATGACAAAACG
GAACGCTATGCCAAGCTATCCTTCCTCGGCGAGGGTCAGTTTGCCACAGT
TTACAAGGCGCGCGACACGGTGACCAACCAAATTGTGGCCGTAAAGAAGA
TCAAGAAGGGATCGCGCGAGGATGCACGCGACGGTATCAACAGGACAGCG
CTGCGTGAGATCAAGATATTGCAGGAGCTGCAGCACGAGAATATCATTGG
CTTGGTGGACGTTTTCGGTCAACTTTCGAATGTCTCGCTGGTTTTCGACT
TCATGGACACGGATCTGGAGGTGATCATCAAGGATAACAAGATTATATTA
ACGCAGGCGAACATCAAGGCCTATGCCATCATGACGCTAAAGGGTCTGGA
GTATTTGCATCTCAATTGGATACTGCACCGCGATTTGAAGCCCAACAATT
TGCTGGTCAACAGCGATGGCATCCTAAAGATTGGCGATTTCGGTTTGGCC
AAGTCCTTCGGTTCGCCCAATCGCATTTACACGCACCACGTGGTCACACG
CTGGTATCGTTCGCCCGAATTGCTCTTTGGCGCCCGACAATATGGCACCG
GTGTGGATATGTGGGCAGTTGGCTGCATTTTGGCTGAACTTATGCTGCGA
GTGCCGTTCATGCCGGGCGATTCGGATCTGGATCAGCTGACACGGATCTT
TTCCACACTGGGAACACCCACGGAAGCTGAATGGCCGCATTTGAGCAAAC
TGCACGACTATCTGCAGTTTCGCAACTTTCCGGGCACACCATTGGACAAT
ATATTCACCGCCGCGGGCAATGACTTGATCCATCTGATGCAACGCCTGTT
TGCCATGAATCCGCTGCGGCGTGTGTCCTGCCGCGAGGCACTGAGCATGC
CGTATTTCGCTAACAAACCGGCGCCCACAGTGGGTCCCAGTTGCCAATGC
GTCGGCCATTCTGGCGCAAGGAGGTGCCATCCGCAGACGGCGACCGAAGC
CTGCGCTCAGGCGCAGCTGTCGAGACTACGGTGAGGGGCATGGATTGGCC
AGAGAGCGCTGCAGTTCGCAGCTTTCTGGACATTCGTTGGCGCCGCGGAC
CAGGTATGGTCTATCTTAATCTAATCTAATCATATTCCCACCTAGCCCTA
GGAATCTGCCTTGAACATGCCTGATTCCCACAAATAAAAGCCCGGGGGCA
ACAGAGACCCTCGCGATACAATTC
FMO01629.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:59:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cdk7-RA | 1448 | CG3319-RA | 90..1148 | 24..1067 | 4890 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:59:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5307786..5308760 | 1050..87 | 4320 | 98.4 | Minus |
| X | 23542271 | X | 5308829..5308894 | 89..24 | 330 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:59:30 has no hits.
FMO01629.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:51:11 Download gff for
FMO01629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3319-RA | 35..1097 | 24..1072 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:23 Download gff for
FMO01629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdk7-RA | 90..1152 | 24..1072 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:03 Download gff for
FMO01629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdk7-RA | 90..1152 | 24..1072 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:03 Download gff for
FMO01629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5307797..5308757 | 90..1040 | 98 | <- | Minus |
| X | 5308829..5308894 | 24..89 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:23 Download gff for
FMO01629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5201830..5202790 | 90..1040 | 98 | <- | Minus |
| arm_X | 5202862..5202927 | 24..89 | 100 | | Minus |
