FMO01630.5prime Sequence
1216 bp (1059 high quality bases) assembled on 2008-04-11
> FMO01630.5prime
CAGTCGACATGGCTGTTTCGGCTCTCAACATGACACCCTACTTTGGCGGA
TATCCCTTTCAAGGACAAGGTCGTGTCAACCAGTTGGGTGGCGTCTTCAT
CAACGGCCGTCCGTTGCCCAATCACATCCGTCGCCAAATCGTGGAGATGG
CAGCAGCTGGAGTCCGTCCCTGTGTCATCTCCCGCCAGCTGCGCGTCTCT
CATGGCTGCGTCTCAAAGATTCTAAACCGCTTCCAGGAGACTGGCTCCAT
TCGGCCCGGAGTAATCGGTGGCAGCAAGCCCCGTGTAGCCACGCCAGACA
TTGAGTCCAGAATCGAGGAACTTAAACAGTCGCAGCCCGGTATTTTTAGT
TGGGAAATCCGCGCCAAGCTAATCGAAGCGGGAGTCTGCGACAAGCAAAA
TGCTCCGTCGGTGAGCTCTATTTCGCGTCTTCTGCGAGGATCCTCCGGAT
CAGGGACCTCCCACAGCATCGACGGCATCCTCGGCGGAGGCGCTGGTTCT
GTGGGAAGCGAGGATGAGAGCGAGGACGATGCCGAGCCCAGTGTGCAGTT
AAAAAGGAAACAAAGGCGTTCCCGGACGACATTCTCCAACGACCAGATCG
ACGCCCTAGAGCGCATCTTCGCCCGTACACAGTACCCCGATGTCTACACC
CGGGAGGAGTTGGCCCAGAGCACGGGATTGACCGAGGCCCGTGTCCAAGT
TTGGTTCTCTAATCGCCGTGCTCGTCTGCGCAAGCAACTGAACACCCAGC
AGTGCCTAGCTTTGCTCCCACATCTACTTCTTTTGGCGCAACTCCCACTA
CCAGTGCCGCCCCTGCTCCAAACATGGGAATGAGCCTTTACAGTTCACAG
AGCTGGCCATCATCCGGAGCCTATGAAAATCATGCTGCCTATGGTGGATC
GGTTGCATCCATGTCCCCGCCAGCAGCACCTCGGGTACCAGCTCTGCCGC
CCACAGTCCCGTAAAGACGCAAGCGCAGCAGCCAGGAACTGGAAGCGAGT
TTATGACTCACTTACGGCGTGGGATCGAGCATGCTACTTACCCATCGCTG
CTATTCATGCGCAAGACTCTGCTAATCTCGGACAACTGAAATCCAAGTTG
CCATCTGGCCGCGCTCGACTTCACCCACCCCTCCAGTGGGCACACGCTCA
ACTGGCGGATTCTTTTCCTTCGATTTGGCGCAGGAACATTAGGGTTACCA
CTCATCTAGGGGAGAT
FMO01630.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:31:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gsb-RA | 1649 | CG3388-RA | 185..1295 | 9..1107 | 5105 | 98.1 | Plus |
gsb-n-RA | 2237 | CG2692-RA | 369..589 | 51..271 | 460 | 81.6 | Plus |
prd-RB | 2459 | CG6716-RB | 401..633 | 87..319 | 415 | 78.5 | Plus |
gsb-n-RA | 2237 | CG2692-RA | 876..1042 | 570..736 | 220 | 75.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:31:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 25063228..25064222 | 58..1047 | 4715 | 99.2 | Plus |
2L | 23513712 | 2L | 12084821..12085053 | 319..87 | 415 | 78.5 | Minus |
2R | 25286936 | 2R | 25051416..25051625 | 271..62 | 405 | 79.5 | Minus |
2R | 25286936 | 2R | 25062148..25062203 | 9..64 | 280 | 100 | Plus |
2R | 25286936 | 2R | 25041692..25041858 | 736..570 | 220 | 75.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:31:48 has no hits.
FMO01630.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:51:13 Download gff for
FMO01630.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3388-RA | 162..1237 | 1..1069 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:46:20 Download gff for
FMO01630.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gsb-RA | 178..1253 | 1..1069 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:11:04 Download gff for
FMO01630.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gsb-RA | 178..1253 | 1..1069 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:11:04 Download gff for
FMO01630.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 25062141..25062202 | 1..63 | 93 | -> | Plus |
2R | 25063234..25064222 | 64..1047 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:46:20 Download gff for
FMO01630.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20949664..20949725 | 1..63 | 93 | -> | Plus |
arm_2R | 20950757..20951745 | 64..1047 | 99 | == | Plus |