Clone FMO01630 Report

Search the DGRC for FMO01630

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:16
Well:30
Vector:pMK33-CFH-BD
Associated Gene/Transcript
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO01630.5prime Sequence

1216 bp (1059 high quality bases) assembled on 2008-04-11

> FMO01630.5prime
CAGTCGACATGGCTGTTTCGGCTCTCAACATGACACCCTACTTTGGCGGA
TATCCCTTTCAAGGACAAGGTCGTGTCAACCAGTTGGGTGGCGTCTTCAT
CAACGGCCGTCCGTTGCCCAATCACATCCGTCGCCAAATCGTGGAGATGG
CAGCAGCTGGAGTCCGTCCCTGTGTCATCTCCCGCCAGCTGCGCGTCTCT
CATGGCTGCGTCTCAAAGATTCTAAACCGCTTCCAGGAGACTGGCTCCAT
TCGGCCCGGAGTAATCGGTGGCAGCAAGCCCCGTGTAGCCACGCCAGACA
TTGAGTCCAGAATCGAGGAACTTAAACAGTCGCAGCCCGGTATTTTTAGT
TGGGAAATCCGCGCCAAGCTAATCGAAGCGGGAGTCTGCGACAAGCAAAA
TGCTCCGTCGGTGAGCTCTATTTCGCGTCTTCTGCGAGGATCCTCCGGAT
CAGGGACCTCCCACAGCATCGACGGCATCCTCGGCGGAGGCGCTGGTTCT
GTGGGAAGCGAGGATGAGAGCGAGGACGATGCCGAGCCCAGTGTGCAGTT
AAAAAGGAAACAAAGGCGTTCCCGGACGACATTCTCCAACGACCAGATCG
ACGCCCTAGAGCGCATCTTCGCCCGTACACAGTACCCCGATGTCTACACC
CGGGAGGAGTTGGCCCAGAGCACGGGATTGACCGAGGCCCGTGTCCAAGT
TTGGTTCTCTAATCGCCGTGCTCGTCTGCGCAAGCAACTGAACACCCAGC
AGTGCCTAGCTTTGCTCCCACATCTACTTCTTTTGGCGCAACTCCCACTA
CCAGTGCCGCCCCTGCTCCAAACATGGGAATGAGCCTTTACAGTTCACAG
AGCTGGCCATCATCCGGAGCCTATGAAAATCATGCTGCCTATGGTGGATC
GGTTGCATCCATGTCCCCGCCAGCAGCACCTCGGGTACCAGCTCTGCCGC
CCACAGTCCCGTAAAGACGCAAGCGCAGCAGCCAGGAACTGGAAGCGAGT
TTATGACTCACTTACGGCGTGGGATCGAGCATGCTACTTACCCATCGCTG
CTATTCATGCGCAAGACTCTGCTAATCTCGGACAACTGAAATCCAAGTTG
CCATCTGGCCGCGCTCGACTTCACCCACCCCTCCAGTGGGCACACGCTCA
ACTGGCGGATTCTTTTCCTTCGATTTGGCGCAGGAACATTAGGGTTACCA
CTCATCTAGGGGAGAT

FMO01630.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:31:49
Subject Length Description Subject Range Query Range Score Percent Strand
gsb-RA 1649 CG3388-RA 185..1295 9..1107 5105 98.1 Plus
gsb-n-RA 2237 CG2692-RA 369..589 51..271 460 81.6 Plus
prd-RB 2459 CG6716-RB 401..633 87..319 415 78.5 Plus
gsb-n-RA 2237 CG2692-RA 876..1042 570..736 220 75.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:31:47
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 25063228..25064222 58..1047 4715 99.2 Plus
2L 23513712 2L 12084821..12085053 319..87 415 78.5 Minus
2R 25286936 2R 25051416..25051625 271..62 405 79.5 Minus
2R 25286936 2R 25062148..25062203 9..64 280 100 Plus
2R 25286936 2R 25041692..25041858 736..570 220 75.4 Minus
Blast to na_te.dros performed on 2014-11-28 22:31:48 has no hits.

FMO01630.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:51:13 Download gff for FMO01630.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3388-RA 162..1237 1..1069 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:46:20 Download gff for FMO01630.5prime
Subject Subject Range Query Range Percent Splice Strand
gsb-RA 178..1253 1..1069 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:11:04 Download gff for FMO01630.5prime
Subject Subject Range Query Range Percent Splice Strand
gsb-RA 178..1253 1..1069 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:11:04 Download gff for FMO01630.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 25062141..25062202 1..63 93 -> Plus
2R 25063234..25064222 64..1047 99 == Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:46:20 Download gff for FMO01630.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20949664..20949725 1..63 93 -> Plus
arm_2R 20950757..20951745 64..1047 99 == Plus