FMO01632.5prime Sequence
1209 bp (1027 high quality bases) assembled on 2008-04-11
> FMO01632.5prime
CAGTCGACATGAAAAATAATAATAATACAACGAAAAGCACTACCATGTCA
TCGAGTGTGCTGTCCACCAACGAAACGTTTCCAACGACCATCAATTCGGC
AACGAAGATCTTTCGTTATCAGCACATAATGCCAGCCCCTAGTCCATTAA
TTCCCGGTGGCAATCAAAATCAACCCGCTGGCACAATGCCAATTAAGACT
CGCAAGTATACACCAAGGGGTATGGCACTGACCAGATGCTCTGAATCAGT
ATCATCTCTATCGCCTGGTTCCTCGCCGGCTCCATATAATGTAGACCAAT
CCCAGTCGGTCCAAAGGCGCAATGCTAGAGAACGAAATCGTGTAAAGCAG
GTGAACAACAGCTTCGCCAGGTTGCGGCAACATATACCACAATCCATAAT
CACGGATTTGACAAAGGGTGGTGGTCGAGGACCTCACAAAAAGATCTCCA
AAGTAGACACACTGCGCATTGCCGTCGAGTACATCCGGAGGCTTCAGGAT
CTGGTGGATGACCTAAATGGGGGCAGCAATATTGGTGCCAACAATGCAGT
CACCCAGCTTCAACTTTGTTTGGATGAGTCCAGCAGTCACAGTTCGAGCA
GCAGTACTTGCAGTTCCTCAGGGCATAATACCTACTATCAAAACACGATC
TCTGTCAGTCCTCTGCAACAACAGCAGCAGCTACAGAGGCAGCAGTTCAA
TCACCAACCGCTGACAGCGCTCTCATTAAATACCAACTTGGTGGGCACAT
CCGTACCAGGTGGAGATGCAGGATGCGTATCCACCAGCAAAAACCAGCAA
CCTGCCACTCGCCAACATCATCATTCAACTCCAGCATGTCCTTTGATTCA
GCACCTACGAAAGAGTTCCCCAACAATATCCACCCACCTGGATCGTCTGG
ATCATCTGGACACGAATTACACACGCACTCCCACTTCAGCTAAAATTTGA
ACCGTACGACATTTTCATTAGACGAGAGACTGCACCCCCGACGACGAGGA
GATTGGACTACATCTCTCTATGGCAGGAGCAGGCAAGCCTTCTAGAACAT
CGATGGCACGCGGGCCAGTAAGGGATATAATCATAATCTATTCTATCATA
TCCCACTAGCCTAGAGATCTTGATTGGACTAGGGCTGCATCTCACAATAG
AACGTCGGCGCATCGAACGCTCTGGACCAAAATTCGAGTGAGAATCTCAG
GAGGCATAT
FMO01632.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:47:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sc-RA | 1438 | CG3827-RA | 118..1152 | 9..1032 | 4895 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:47:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 396177..397211 | 9..1032 | 4665 | 98.7 | Plus |
Blast to na_te.dros performed 2014-11-28 18:47:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2340..2509 | 666..836 | 140 | 56.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6891 | 663..836 | 139 | 60.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2817..2899 | 666..747 | 133 | 65.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6767..6940 | 663..837 | 125 | 56.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6788..6944 | 663..822 | 125 | 58.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6746..6948 | 663..862 | 124 | 58.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2744..2853 | 607..718 | 122 | 58.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2786..2866 | 665..747 | 121 | 63.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6800..6872 | 663..737 | 117 | 65.3 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 5619..5684 | 632..699 | 110 | 66.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1073..1121 | 663..711 | 110 | 69.4 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 7074..7139 | 632..699 | 110 | 66.7 | Plus |
FMO01632.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:51:16 Download gff for
FMO01632.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3827-RA | 114..1152 | 3..1032 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:27 Download gff for
FMO01632.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sc-RA | 114..1152 | 3..1032 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:09 Download gff for
FMO01632.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sc-RA | 114..1152 | 3..1032 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:09 Download gff for
FMO01632.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 396173..397211 | 3..1032 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:27 Download gff for
FMO01632.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 290206..291244 | 3..1032 | 98 | | Plus |
