FMO01633.5prime Sequence
734 bp (734 high quality bases) assembled on 2008-04-11
> FMO01633.5prime
CAATCGACATGGATTCCAGGATGTGCCGTGTCTGTTTGAGGGAGATGGAG
AACATGCTATGCATCTTCGAAACGATGCCGCTACCCGGCGTTTCCCTAGC
GACCATGATTTCCGATTGGTGCGGCTTCCCGGTTCTACCGAAGGATCCTT
TTCCCAAGACCATTTGCCAGTCTTGTGCGCTGGATGCGCAGACTGCTTAC
GGGATGGACAGCGTGCAGGTGATTGAGCAGGATGAGATGGTGGTCAGTGA
GATGAATTATGAGGAAGAAGGATCGAATGACTCCGATGTTGAACTGATTG
AGCCAGTCGATGGCAGCCAGGAGATGGAGACAATTGACTTGACAATCGAT
TCGCCGGGGGACAACGTGGAGAATATGTGCCCCAACTCAAACTCCAACGG
GAATGGCAATGTGAGCCAGAGCAGCGCCCAGAAGGATACCAAGAAGAAAA
TGCTGAAGAAGACACATAAATGTAACATTTGCGGGAAGTATTTCATGTTA
CCTGCGCACCTTAAGTGTCACATGTGGGTCCATGCGCGTGAAAAACCTTA
CAAATGCTTACAATGCTCCCAGTCCTACGCACAAATCCGCGGTCTTAGGC
GCCATGAGCGCGTACATAGTTCGAGACCTGAATTACGATCCTACAAGTGT
TCCCGATGCCCCAAGATCTTCAACAGAAACTCTGCCCTTAAGAACCACGA
GACCATGCACCATAATGCAAGCTTTCTAGACCAT
FMO01633.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:22:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4318-RB | 1464 | CG4318-RB | 65..772 | 9..716 | 3525 | 99.9 | Plus |
| CG4318-RB | 1464 | CG4318-RB | 1036..1116 | 636..716 | 375 | 97.5 | Plus |
| CG4318-RB | 1464 | CG4318-RB | 1122..1202 | 636..716 | 375 | 97.5 | Plus |
| CG4318-RB | 1464 | CG4318-RB | 778..858 | 636..716 | 375 | 97.5 | Plus |
| CG4318-RB | 1464 | CG4318-RB | 864..944 | 636..716 | 375 | 97.5 | Plus |
| CG4318-RB | 1464 | CG4318-RB | 950..1030 | 636..716 | 375 | 97.5 | Plus |
| CG4318-RB | 1464 | CG4318-RB | 1208..1282 | 636..710 | 345 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:22:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13154153..13154860 | 716..9 | 3525 | 99.9 | Minus |
| X | 23542271 | X | 13153723..13153803 | 716..636 | 375 | 97.5 | Minus |
| X | 23542271 | X | 13153809..13153889 | 716..636 | 375 | 97.5 | Minus |
| X | 23542271 | X | 13153895..13153975 | 716..636 | 375 | 97.5 | Minus |
| X | 23542271 | X | 13153981..13154061 | 716..636 | 375 | 97.5 | Minus |
| X | 23542271 | X | 13154067..13154147 | 716..636 | 375 | 97.5 | Minus |
| X | 23542271 | X | 13153643..13153717 | 710..636 | 345 | 97.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:22:45 has no hits.
FMO01633.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:51:17 Download gff for
FMO01633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4318-RA | 1..699 | 21..720 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:43:38 Download gff for
FMO01633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4318-RB | 59..775 | 1..720 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:06:43 Download gff for
FMO01633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4318-RB | 59..775 | 1..720 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:06:43 Download gff for
FMO01633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13154150..13154865 | 1..720 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:43:38 Download gff for
FMO01633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13048183..13048898 | 1..720 | 99 | | Minus |
