FMO01638.5prime Sequence
1179 bp (1010 high quality bases) assembled on 2008-04-11
> FMO01638.5prime
CAGTCGACATGACGAGCATCTCGGCCCTGCTCCATCGGAGCCACAGCCAC
AGCAATGGTTACACGAGCAGCGGGAGTAGCAATCACAGCCATAGCAGCAG
TCTCTCACCGCAGTTGCCCGGCATCAATTTGGGTTTGGGCATGGTCGGTG
GCTTGGGCATGGGTATGAGTGTGGGAGTAGGCTCTGGATCGGGAAACACC
ACCCCACCACCGATGCCGCCAGCTGACCTCGCCGTTCCGCCAGCGGCCCC
CACTCCGGTGGCACCCAAAATGCACCAGCACACGCACCACCATGGCAACT
CCCACCATAATGCCCCGACCAGCCACTCGAATTCGAATACTGGAAGCCAT
CACAACAGCCACGACCACATTAAGCGACCAATGAACGCTTTCATGGTCTG
GTCGCGGGGGCAGCGTCGCAAAATGGCCCAGGACAATCCAAAAATGCACA
ATTCTGAAATATCAAAACGCCTGGGCGCCGAGTGGAAATTACTCACCGAA
GGACAGAAGCGTCCATTCATCGACGAGGCAAAACGATTGCGGGCTCTGCA
CATGAAAGAACATCCCGACTACAAGTATCGACCACGTCGCAAGCCCAAGA
CGCTCAACAAGTCACCAGTGCCAGGTGGTGGTGGTGGCGGCGGTGGAGGT
GGTGCCAACGGTGGTGTCAACGCTGGTGGTGCGGGTAACTCCGGTCCCAG
TGGCCCAGGATCAGTTGGCTCCCCCAAGGATATGCAGCCCCAGTTGTCGC
CCTTGGGTCAGTCGCTGCCACATCTCCACGGACATCCGCACCAGTCACCA
TATCAATCGCATCCACACCACCCGCATCCTCATCCACATCATGTCCAGCT
GGCCGCCGCCACCTTGAGCGCCAAGTACGGGTTTGGTTCGCCACTGGAGT
TATCGCTGCCCCGCCTGCCGATGCCTTTCCCGGCTCGCCCACTATCCACT
GGATCCCACGTTGGCCCTGGACCTAACAGGCGCTCCTCAGGCGATGTACG
CCGGCTCCATCTACCACCCGTGGCGATTTCTGCCGCTGAATAAGTCGGAA
CTCCACCCTCCCCGCCCAGCAGCAAGTGGTACTGCATCTTATTCCTACGA
TTCATCAGTTCAAAGAGTCCTTACATGCGGTAATGCCAGACGCTACAGAT
CCGCCAACACATCAATGCTAGCCTCCTGA
FMO01638.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:47:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sox21a-RB | 2335 | CG7345-RB | 395..1488 | 8..1099 | 5135 | 98.5 | Plus |
| Sox21a-RA | 2335 | CG7345-RA | 395..1488 | 8..1099 | 5135 | 98.5 | Plus |
| Sox21b-RC | 3201 | CG32139-RC | 1605..1834 | 366..595 | 520 | 82.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:47:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14106541..14107075 | 542..8 | 2675 | 100 | Minus |
| 3L | 28110227 | 3L | 14104352..14104888 | 1074..541 | 2305 | 97.4 | Minus |
| 3L | 28110227 | 3L | 14176684..14176918 | 600..366 | 485 | 80.4 | Minus |
| 2L | 23513712 | 2L | 8827031..8827270 | 372..611 | 375 | 77.1 | Plus |
| 3L | 28110227 | 3L | 14125085..14125194 | 475..366 | 250 | 81.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:47:52 has no hits.
FMO01638.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:51:28 Download gff for
FMO01638.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7345-RA | 1..1087 | 9..1092 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:29 Download gff for
FMO01638.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sox21a-RA | 388..1482 | 1..1092 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:11 Download gff for
FMO01638.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sox21a-RA | 388..1482 | 1..1092 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:11 Download gff for
FMO01638.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14104352..14104887 | 542..1074 | 97 | <- | Minus |
| 3L | 14106542..14107078 | 1..541 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:29 Download gff for
FMO01638.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14097452..14097987 | 542..1074 | 97 | <- | Minus |
| arm_3L | 14099642..14100178 | 1..541 | 99 | | Minus |
