FMO01639.5prime Sequence
1236 bp (816 high quality bases) assembled on 2008-04-11
> FMO01639.5prime
ATTATACGAAGTTATCAATCCACATGCCGCATACAGGTCAAGCTGGAGTC
AACCAATTGGGCGGAGTTTTTGTGAATGGCCGTCCTTTGCCGGACTGCGT
TCGTCGGAGGATCGTCGACTTGGCTTTGTGCGGAGTGAGGCCCTGTGATA
TATCCCGCCAGCTTCTGGTTTCCCATGGCTGCGTTTCCAAAATTCTAACT
CGCTTCTATGAGACGGGCTCCATTCGACCGGGATCCATTGGCGGCAGCAA
GACCAAGCAAGTGGCCACGCCCACCGTGGTGAAGAAGATCATCCGGCTAA
AGGAGGAAAACAGCGGCATGTTCGCGTGGGAAATTCGCGAGCAGCTGCAA
CAGCAGCGCGTCTGCGATCCCAGTTCGGTGCCCTCGATCAGCTCCATCAA
CCGGATTCTGCGCAACAGCGGTCTGTGGACCGATGAGATGACATCCAGTC
AGCAGAATGCCGCAGCTGCTGCAGCGGCGGCAGCGGCAGCGGCTCATCAG
GCGGGCAGTGGTCCATCGAATGGATATGGCGGCCAAGCTCCACCTCCTCC
GGTAACCGTGGCTCCGCCCACACCGGCAGCCACGCCCTCCATCGCACGCT
ACGCCAAGCCGCCGGCGTTGATGATGAACTCCGCCGGCGAGATGCCAATT
AAACCCGCTCCCAAAATGCCGCCCAGCATGGGACATGGCCACAGTCACGG
CCTGAACCCCAATGTTTCTGGCCTGGACTTGAGTTACTCCGCTCTACACA
AGCACTGGCTGTGGAATCCCTCCCTGCTCTACTACACCCAGCTCACATTC
AGGCCAGGCGGCTGCGTCGGGTGGTCAATTCCTGCCCTATGCCGGTGGCT
ATTTGCCCCATGCCATGGCAGCGGCGGCCGCATCTTCCACATCCGCCTTG
GGTGGTTTCACAAGTCGGAGAGCTCCTTCGATCTTTCGAATCCCGGAGCG
CTTGGTGATGCGCCTAGCGACTGCCACTCGGTAATCCTACCCGGAGGACT
CTTCACTACTGGTTCTGTAAGTGAAATGCGTGCCGGATTAGTCTCAGATG
CTTCCCATGGACGAACTCTGACCACAGCGCAGACGAATCGAATCATCAGA
GAACTGCTCCATGAAGCCGGGAGTATCGACCCCGACTGGCAGCAACCGCT
CTGGAGTCTGGAATTCGATCGTGCTAAGAACCATGGTATGGCGCGTGGTC
TCACCATCTGGCAAACCAGCTCAGGATATGTAGGAA
FMO01639.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:48:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Poxn-RB | 2458 | CG8246-RB | 843..1996 | 23..1164 | 4655 | 94.9 | Plus |
| Poxn-RA | 2320 | CG8246-RA | 705..1858 | 23..1164 | 4655 | 94.9 | Plus |
| gsb-RA | 1649 | CG3388-RA | 344..454 | 141..251 | 210 | 79.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:48:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15827349..15828075 | 979..256 | 3320 | 98.1 | Minus |
| 2R | 25286936 | 2R | 15830314..15830457 | 178..35 | 720 | 100 | Minus |
| 2R | 25286936 | 2R | 15830166..15830246 | 257..177 | 405 | 100 | Minus |
| 2R | 25286936 | 2R | 25063338..25063448 | 141..251 | 210 | 79.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:48:25 has no hits.
FMO01639.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:51:29 Download gff for
FMO01639.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8246-RA | 558..1539 | 15..994 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:21 Download gff for
FMO01639.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Poxn-RA | 700..1681 | 15..994 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:40:48 Download gff for
FMO01639.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Poxn-RA | 700..1681 | 15..994 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:40:48 Download gff for
FMO01639.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15827332..15828073 | 258..994 | 97 | <- | Minus |
| 2R | 15830166..15830245 | 178..257 | 100 | <- | Minus |
| 2R | 15830315..15830455 | 37..177 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:21 Download gff for
FMO01639.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11714837..11715578 | 258..994 | 97 | <- | Minus |
| arm_2R | 11717671..11717750 | 178..257 | 100 | <- | Minus |
| arm_2R | 11717820..11717960 | 37..177 | 100 | <- | Minus |
