FMO01641.5prime Sequence
1062 bp (997 high quality bases) assembled on 2008-04-11
> FMO01641.5prime
AAAAAACAAAGTTATCAGTCGACATGCCGCAAAGAACTCCCAGTCCCGCT
AACTCTGATGTTTCGGTGGGTTCGCCCAGTCCACCGCCTCTGAGATCGTT
GAATATGAAACGATTGCGGCTTTTGAGGAGTCCTATTAGCCTGGAACATG
ACCGCCAAAAGTCATCACCCGTCAGGGTCAAGAGCTTTTCCATTGCCGAT
ATCCTGGGGCGAGGGCATGAAGAGGATCGTGTGGAGAAGAAGCCGGAGAG
AATTGCCATTCCCAATGCTTTACCAGGAGTACCTGCTCCATTGGCTCTGA
TCAACGAAAGATTGCAAATACCCTTGGTGCCGAATTGCCCTCCGCCGGCT
GCACTACATACATTTTTATCGCCCGCTTTGCTCCACAGCTATGAGCAGCG
ACTGGCCTGGGACTACCAGCGCCAGCTCCAGGAGCACTTCCAGGCACAGG
CGCAACTCCTCCGGCAGATGACCCTGAATCCCGCGATCATTGCCTCCGAG
GACGGCAGTTCAGAGCGTTCCCAGCGATCAAGCAGCAGCAATGGCAGCAC
CGAATGCTGCAGTCCCACCCAGGCGGAAAAAGTGGAAAAACGTTCCCAAG
AGGACAGAATGGAGGTTCCTAAGAAGTCGCCCGAGGAACAACCAAAGGGG
GCCAGCAAATCAAGTGGAGACACTCCCTTGGATGCCCTCTTCCAGCTGTC
CACCAAAAACTTTGACGAAGAGCGGTCAGTACATCAAAGAGGCATTCAGC
CCTTCGCTGGAACATATTCGAGACTTCGCCCAAATCCAAAGGGACGAAGG
GCATAACGAATGCGGGAATGAATGGAAAACTCAGTGATTTGGAAAACAGC
ACAAGTTGGTGTTATTGTGGATGTGGATGTTGCTATTTACACGCAACACG
ACGCAAGCTTTCTAGACCATTCGTTTGGGGGCGCGGGCCCAGGGTAGTGG
TCATATCATAATCATAATCATATCATAATCACACTAGGCCTAGGAGAATC
TGGTCATGACTAGTGCTGATTCTCACCATAAAAACGCCGGCGGCACGGAC
GTTCTGACAATC
FMO01641.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:47:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lbl-RB | 1758 | CG6570-RB | 167..1048 | 24..902 | 4335 | 99.7 | Plus |
| lbl-RC | 1803 | CG6570-RC | 167..866 | 24..723 | 3500 | 100 | Plus |
| lbl-RA | 1855 | CG6570-RA | 167..866 | 24..723 | 3500 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:47:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21433268..21433967 | 723..24 | 3500 | 100 | Minus |
| 3R | 32079331 | 3R | 21426925..21427104 | 902..725 | 820 | 98.3 | Minus |
| 3R | 32079331 | 3R | 21445093..21445425 | 718..389 | 550 | 78.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:47:54 has no hits.
FMO01641.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:51:33 Download gff for
FMO01641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6570-RA | 154..856 | 21..723 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:30 Download gff for
FMO01641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lbl-RB | 164..1048 | 21..902 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:12 Download gff for
FMO01641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lbl-RB | 164..1048 | 21..902 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:12 Download gff for
FMO01641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21426925..21427103 | 726..902 | 98 | <- | Minus |
| 3R | 21433265..21433969 | 18..725 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:30 Download gff for
FMO01641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17252647..17252825 | 726..902 | 98 | <- | Minus |
| arm_3R | 17258987..17259691 | 18..725 | 99 | <- | Minus |
