Clone FMO01642 Report

Search the DGRC for FMO01642

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:16
Well:42
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG8117-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO01642.5prime Sequence

527 bp (527 high quality bases) assembled on 2008-04-11

> FMO01642.5prime
ATAATACCAAGTTATCAGTCGACATGTCCATGGAAATACGCCTCAAGTGC
CGCGAGATGTTGGCAACCGCATTGAAATCGGGCAACATGCCACCAGGATG
TGGCGATCCGGATGACATGGCCGCTAAACTGGAGGACGCAATTTACGGCG
ACTTGAACGGCTGCAAGGTGAAGTACAAAAATCGCATACGTTCGCGTTTG
GCCAACTTGCGCGATCCGAAGAATCCAGAGCTGCGCCAGAAGTTCCTATT
AGGTCAAATAACGCCCGAAGAGTTATCCAAGATGACGCCCGAGGAGATGG
CCAGCGATGATATGAAGCAGATGCGCCAGAAGTACGTTCAGGACTCGATC
AATGCGGCACAGATGGCCAAGGTTCAGGGCACCAAGACGGATCAGTTCAA
ATGCGAACGCTGCAACAAACGCAACTGCAGCCAATTGCATATCCGTGATG
GTGACGAGCCCATTATCACCTTTGTGATATGCGACGAGTGCGGCAACCGC
TGGAAGAGCGCAAGCTTTCTAGACCAT

FMO01642.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG8117-RA 770 CG8117-RA 69..555 23..509 2405 99.6 Plus
TfIIS-RB 1773 CG3710-RB 957..1192 277..506 290 75.9 Plus
TfIIS-RA 1401 CG3710-RA 957..1192 277..506 290 75.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:46
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15644290..15644776 23..509 2405 99.6 Plus
2L 23513712 2L 15059583..15059735 429..277 285 79.1 Minus
Blast to na_te.dros performed on 2014-11-28 19:36:47 has no hits.

FMO01642.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:51:35 Download gff for FMO01642.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8117-RA 1..489 24..510 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:50 Download gff for FMO01642.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8117-RA 60..555 12..509 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:08 Download gff for FMO01642.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8117-RA 60..555 12..509 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:08 Download gff for FMO01642.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15644281..15644776 12..509 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:50 Download gff for FMO01642.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15538314..15538809 12..509 98   Plus