FMO01642.5prime Sequence
527 bp (527 high quality bases) assembled on 2008-04-11
> FMO01642.5prime
ATAATACCAAGTTATCAGTCGACATGTCCATGGAAATACGCCTCAAGTGC
CGCGAGATGTTGGCAACCGCATTGAAATCGGGCAACATGCCACCAGGATG
TGGCGATCCGGATGACATGGCCGCTAAACTGGAGGACGCAATTTACGGCG
ACTTGAACGGCTGCAAGGTGAAGTACAAAAATCGCATACGTTCGCGTTTG
GCCAACTTGCGCGATCCGAAGAATCCAGAGCTGCGCCAGAAGTTCCTATT
AGGTCAAATAACGCCCGAAGAGTTATCCAAGATGACGCCCGAGGAGATGG
CCAGCGATGATATGAAGCAGATGCGCCAGAAGTACGTTCAGGACTCGATC
AATGCGGCACAGATGGCCAAGGTTCAGGGCACCAAGACGGATCAGTTCAA
ATGCGAACGCTGCAACAAACGCAACTGCAGCCAATTGCATATCCGTGATG
GTGACGAGCCCATTATCACCTTTGTGATATGCGACGAGTGCGGCAACCGC
TGGAAGAGCGCAAGCTTTCTAGACCAT
FMO01642.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8117-RA | 770 | CG8117-RA | 69..555 | 23..509 | 2405 | 99.6 | Plus |
TfIIS-RB | 1773 | CG3710-RB | 957..1192 | 277..506 | 290 | 75.9 | Plus |
TfIIS-RA | 1401 | CG3710-RA | 957..1192 | 277..506 | 290 | 75.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15644290..15644776 | 23..509 | 2405 | 99.6 | Plus |
2L | 23513712 | 2L | 15059583..15059735 | 429..277 | 285 | 79.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:36:47 has no hits.
FMO01642.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:51:35 Download gff for
FMO01642.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8117-RA | 1..489 | 24..510 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:50 Download gff for
FMO01642.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8117-RA | 60..555 | 12..509 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:08 Download gff for
FMO01642.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8117-RA | 60..555 | 12..509 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:08 Download gff for
FMO01642.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15644281..15644776 | 12..509 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:50 Download gff for
FMO01642.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15538314..15538809 | 12..509 | 98 | | Plus |