FMO01644.5prime Sequence
1211 bp (1023 high quality bases) assembled on 2008-04-11
> FMO01644.5prime
CAGTCGACATGGCCGAATTAATCAGTCAGCCCACTAAAATTAACAACAAT
AATTTTGGTGCCGGCGTCACAATGCGCGAGAAAAAGGGAGGAGCCCTTCA
GAAGCTCAAGAAGAGACTTTCGCACAGCTTCGGCAGATTAACAATTTCCC
GCGAAGATGGCGACGAGTCGACGCACCACCATCACCACCACCATCATCAT
CGCGGTGGACATGGCGGGCACCACAACCACGGTAACAAAGTTCCATACAA
CGGCTACAATTCGGAGGAATACTTGGACCGACTCGAACCGAATGGCAATA
TACCCGCTGACAAGACAAATTGCAGATATGGAGACTGGCGCAGCACGGAC
AGCACCGACCACCACGATCGCGTCCAGAGACAGCTTTCCGTGTCCTCCGA
CAGCAAGTTGCTCGACGAGGACATTCGCGAGGAGATGAAGTACCATTCGC
ACGTGGTCATGCGTCCCAAGAAGCCGCCCAGACCCAAATCCGAGGTCTTT
CTGAACAAACAGGAAACGCATCCGCGCCGGAAACGATTCAGTGCATTTGG
TGGCGACTCCCCATTTGGCAAGCAGGAGGCCTATGTTAAACTCGAGCCGC
TGGGCGAAGGCTCCTATGCGACGGTCTACAAAGGATTTAGCAAATTAACC
TACCAGCGGGTGGCGCTGAAGGAGATTCGCCTGCAGGAGGAGGAGGGAGC
ACCCTTCACCGCGATTCGCGAGGCCTCGCTGCTGAAAGAACTGAAACACA
GCAACATCGTCACGCTGCACGACATTGTCCACACGCGCGAGACGCTGACC
TTTGTCTTTGAATATGTGAATACGGATCTGTCGCAATACATGGAGAAGCA
TCCGGGCGGGCCTGGATCATCGCAACGTGCGCCTGTTCCTCTTCCAGCTG
CTCCGTGACTCTCTACTGCCACAGCGGCGTGTCTCATCGGGATGTCAAGC
CGCAAACCTGCTTATTAGCGACTGCGGCGACTGAAGTTGGCCGATTTCGG
ACTGACAGGCAGAGCGTGCCCAGCACCCTACTCCACGAGGTGTCACGTTA
TGGTACCGCCCTTCAAATGTCTGCTGCAGCACGGATACTCGACCTCCTGA
ATGTGGGGGCGGGCTGCAACCTTCTGAAATGTTAACGGATGCACGTTCCG
CATCTGTTATACTTCGAACTACACGCTGGACAGGAAATTCAAATTGCTGT
GGGAGGGTCTC
FMO01644.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Eip63E-RC | 2891 | CG10579-RC | 377..1510 | 7..1118 | 5035 | 97.5 | Plus |
| Eip63E-RB | 2919 | CG10579-RB | 405..1538 | 7..1118 | 5035 | 97.5 | Plus |
| Eip63E-RA | 2700 | CG10579-RA | 186..1319 | 7..1118 | 5035 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3593327..3593547 | 332..552 | 1105 | 100 | Plus |
| 3L | 28110227 | 3L | 3578289..3578480 | 142..333 | 960 | 100 | Plus |
| 3L | 28110227 | 3L | 3598061..3598239 | 640..818 | 880 | 99.4 | Plus |
| 3L | 28110227 | 3L | 3598359..3598551 | 818..1004 | 590 | 95.4 | Plus |
| 3L | 28110227 | 3L | 3594651..3594742 | 552..643 | 460 | 100 | Plus |
| 3L | 28110227 | 3L | 3552786..3552864 | 63..141 | 395 | 100 | Plus |
| 3L | 28110227 | 3L | 3546075..3546132 | 7..64 | 290 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:11:57 has no hits.
FMO01644.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2010-07-30 09:25:04 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:25:51 Download gff for
FMO01644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eip63E-RA | 186..1255 | 7..1062 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:35 Download gff for
FMO01644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eip63E-RA | 186..1255 | 7..1062 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:35 Download gff for
FMO01644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3578289..3578480 | 142..333 | 100 | -> | Plus |
| 3L | 3593329..3593546 | 334..551 | 100 | -> | Plus |
| 3L | 3594651..3594742 | 552..643 | 100 | -> | Plus |
| 3L | 3598065..3598239 | 644..818 | 100 | -> | Plus |
| 3L | 3546070..3546131 | 1..63 | 95 | -> | Plus |
| 3L | 3552787..3552864 | 64..141 | 100 | -> | Plus |
| 3L | 3598360..3598624 | 819..1069 | 92 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:25:51 Download gff for
FMO01644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3546070..3546131 | 1..63 | 95 | -> | Plus |
| arm_3L | 3552787..3552864 | 64..141 | 100 | -> | Plus |
| arm_3L | 3578289..3578480 | 142..333 | 100 | -> | Plus |
| arm_3L | 3593329..3593546 | 334..551 | 100 | -> | Plus |
| arm_3L | 3594651..3594742 | 552..643 | 100 | -> | Plus |
| arm_3L | 3598065..3598239 | 644..818 | 100 | -> | Plus |
| arm_3L | 3598360..3598624 | 819..1069 | 92 | == | Plus |
