FMO01646.5prime Sequence
506 bp (506 high quality bases) assembled on 2008-04-11
> FMO01646.5prime
ATTATACGAAGTTATCAGTCGACATGGCCAGCGAGGAACTATTTGAGGCT
GAATTCTCGGAAGAACAGGACTTGGAGCATCAGCAGGCCATGGAGACTGA
GGAGGCGGAGCTAGCGGAAACAGAAGAGCCTTTGGAAATCACCGAGGAAT
CGCCGGATAATCCTGAGGCAGAATCTACAACAGAACAATTGACAGAAAAA
CCAGTGACGAATGGCAACAAGGCCCCTGCTGATAACGAAGCCAAGATGAC
ACAACTGCCGTTGGCCAGGATACGGAACATAATGAAACTAGATCCGGATC
TGCATATGGCCAACAATGAGGCCGTGTTCATAGTGGCGAAGGCAGTGGAA
CTATTCATAGCCTCGTTGTCACGGGAATCATATACCTACACGGCGCAGTC
CAAAAAGAAAACCATACAAAAGAGGGACGTGGATATGGCCATTTCTGCTG
TGGACAGTTTGCTATTCCTTGATGGAGCCATGAACTTTGCAAGCTTTCTA
GACCAT
FMO01646.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:32:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mes4-RB | 740 | CG11301-RB | 66..530 | 24..488 | 2325 | 100 | Plus |
| Mes4-RA | 683 | CG11301-RA | 66..530 | 24..488 | 2325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:32:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22412085..22412372 | 201..488 | 1440 | 100 | Plus |
| 2R | 25286936 | 2R | 22411854..22412034 | 24..204 | 905 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:32:03 has no hits.
FMO01646.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:51:19 Download gff for
FMO01646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11301-RA | 1..469 | 24..492 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:46:24 Download gff for
FMO01646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mes4-RA | 54..534 | 12..492 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:11:12 Download gff for
FMO01646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mes4-RA | 54..534 | 12..492 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:11:12 Download gff for
FMO01646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22412089..22412376 | 205..492 | 99 | | Plus |
| 2R | 22411842..22412034 | 12..204 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:46:24 Download gff for
FMO01646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18299347..18299539 | 12..204 | 97 | -> | Plus |
| arm_2R | 18299594..18299881 | 205..492 | 99 | | Plus |
