FMO01648.5prime Sequence
1246 bp (980 high quality bases) assembled on 2008-04-11
> FMO01648.5prime
CAGTCGACTTAAACCGAAAACGTGAAATGTTAATAAATGTGTGCCGAGTT
TGCGGCAGGAGCAGGCTGTGCCCCAAAGCCGTGGAGCTCTTCAAACCTGG
CAGACAGGATATTCTTCGCCGCATCCAACTAATAACCGGAATTCTCCTTC
AGCAGATTCCCAATGCTCCGGATATGGTGTGCTTTTGCTGCCAGACAGAT
CTGCAATCGGCCATGATTTTCCGGAGGCAGTGCATCCTGCAGCAGAAGAA
ATGGGTGCCATTGCTACAAAGTGATAAAGTGGGAGCCAGCGAGGAAAAGA
AGGTGGAACCCAATGATCCCTCAACCAAGAAGAAAACGACCAAGCGGCGA
AGGGGGCGACCCAGGATGCCACTGGAAATTGTAGATATAGTCGTAACGAA
CGAGAGTAAGGCTTCAGCAGGTGAATCAGTTGGTGGTGATGAATTTGATC
AGCCGGTGGAGATCTCCAATGAACCGGATGCCACCGATAGCGATGTTAAT
CTGGAGGAAATAGATCTTCCGGATGAGGATGGCTTGGAGTCGGATCACGA
TTTACCCAATGTTCAAATCCACAAGTGCGATACTTGTGGAATTATCAAAA
ATAATAAATCATCTCTGGTCAGGCATCAGTTTGAACATAATGGAATAAGA
CCATATCCCTGCAAGGAGTGCCCAAAGACCTTTCTGGTAGCGAGTGAGCT
GAAGGCACACAATCTCACCCATCACACCTTGGAGCCCCCGTTCGCCTGTC
GCTACTGCGATCGTCGCTACTTCTCCGTGGTGGGCAGGAAGAAGCACGAG
CGGGTCCACACCAACGAGCGACCATTTGTGTGCGATCAGTGCGGCAAGGC
CTTCACCAGGACCCTGCATTCTGAAGGGCCACATGGCGGTCCACAAGTTG
TAGGAAGTATAGTTGCGATGTTCTGCAATCGTTCGTTCAGCCTGAAAAAA
ACATCTCGCTACGCACTTCATCCTCAATACCCTCCAGCCGGAATGGCTGA
AGCCGTCCCCCTCGTCGTCGGGAGTACATTGTTCCATGCTCTCAGTTTTG
GAATCGGATTGAAATCCTGACTCCCAAGGGACACTTCCACTTGACAACTT
TCCAATTGACACAGGATTCTGGGTGCATTTCCAATTCGCACTTTTTGGTG
GCTAGAAAATGTTGCCAGCCTTTCCAAACCATCTCTTGCGCGTCGCGGGC
CGGTTAATGGGGGTTTAAATTTCATACTTCAAGTTACATTAATCAG
FMO01648.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8145-RB | 1553 | CG8145-RB | 51..1165 | 9..1145 | 4825 | 96.3 | Plus |
| CG8145-RC | 1862 | CG8145-RC | 51..1165 | 9..1145 | 4825 | 96.3 | Plus |
| CG8145-RA | 1217 | CG8145-RA | 51..1165 | 9..1145 | 4825 | 96.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8723433..8723951 | 147..665 | 2595 | 100 | Plus |
| 3R | 32079331 | 3R | 8724134..8724362 | 665..894 | 1085 | 99.1 | Plus |
| 3R | 32079331 | 3R | 8723224..8723361 | 9..146 | 690 | 100 | Plus |
| 3R | 32079331 | 3R | 8724448..8724518 | 910..982 | 205 | 91.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:17:49 has no hits.
FMO01648.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2010-07-30 09:25:02 Download gff for
FMO01648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8145-RA | 1..1058 | 9..1079 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:34:42 Download gff for
FMO01648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8145-RA | 44..1108 | 1..1079 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:58 Download gff for
FMO01648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8145-RA | 44..1108 | 1..1079 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:58 Download gff for
FMO01648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8723217..8723361 | 1..146 | 97 | -> | Plus |
| 3R | 8723433..8723950 | 147..664 | 100 | -> | Plus |
| 3R | 8724134..8724382 | 665..912 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:34:42 Download gff for
FMO01648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4548939..4549083 | 1..146 | 97 | -> | Plus |
| arm_3R | 4549155..4549672 | 147..664 | 100 | -> | Plus |
| arm_3R | 4549856..4550104 | 665..912 | 98 | -> | Plus |
