FMO01649.5prime Sequence
1115 bp (1021 high quality bases) assembled on 2008-04-11
> FMO01649.5prime
CAGTCGACATGTCTGAGTTGCGATCGATTTGCCGAACTTGTGGCAAAAAT
GTGACCAATTTGCAGGGTCGGGCTACCAAACTGTTCAACAAAAGCAACTA
TCACTTTATTAGTATACTGGAAAATATCACCGATATGTATCTCGAATTTG
ACACCACTCTGCCACATCTAATTTGCCAATGTTGCAAAGTGCAGCTGGAC
AGGATCTTAACATTTCGCAATAAGTGCTTGGAGGTCCACAAGTCTTTTAT
GGCCGCTAACAGGAAACTTTTGCGAAAAAAGGCGATAGTTGATGAGGAAC
TCGATAAACCGGATGTTGAGAAGCTACAGCAGGATTTGTGGGACCACACG
GATCAGGAAATGTGTGTAGCAATGGCAGATACAGCTGGGCTTCTGCGGGA
AGATCACAATGATAATGAGAAGGCGAAGGACGCAGAAGATGCGACTCAGA
ATGAGAAGAATCAGGAGGAACAAGTACAAGTACAAACAGAGGAGGTGGAG
CACTGTCAAGAGCAGCTCCATAACATGTCCATCATCTCGAAGGGAGTAAG
TGCCCGTGTCCCCAAGCGTACGAAGCGCAACTCCAAGTCCTGGTTCTGTG
ACCAGTGCGGCGGCGTCTTCAAGTCCTCTACCTACCTCAAACTGCACCTG
CAGCGACACAGCGGTCACAAACCGTTCGCGTGCGACATCTGCCAGGCCAA
GTACTACACGGATAACGAGATGCGGCGCCACAGAATCCTTCACACGGACG
CCAGACCGTACGCTTGTCGGTTCTGTAGCAAGACCTACCGAGGATGCAGC
AGTAAAGTGGTCCACGAGCGGACCCACACCAACGAGCGTCCCTTCAGTGC
CAGCATTGCGACAAGGCCTTCACCTCCACGTCGACGCGTCAAAACATGAG
ATGCTGCACACTAATCAGCGGAGTACCACTGCGAGATCTGTGACCAGGTG
TTCCTGCGCTCATCCCATTTGACCCTACATCAAGCCACTAAATTACACCA
GCGAAGAGCTGAAAGTGCTAGGATTGTCGCAGGCTTCTTAGAACCAATCC
GTTTGGCCGCGCGGGGCCCAGGTAGATGGTCTTAATCAAATTCATATCAT
AATCTAAATCCCAAC
FMO01649.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:59:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31441-RA | 1219 | CG31441-RA | 72..1094 | 9..1028 | 4980 | 99.3 | Plus |
| CG31441-RB | 1223 | CG31441-RB | 72..1098 | 9..1028 | 4930 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:59:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11236550..11237333 | 141..922 | 3820 | 99.7 | Plus |
| 3R | 32079331 | 3R | 11236357..11236488 | 9..140 | 660 | 100 | Plus |
| 3R | 32079331 | 3R | 11237400..11237499 | 929..1028 | 440 | 96 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:59:32 has no hits.
FMO01649.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:51:49 Download gff for
FMO01649.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31441-RA | 66..1102 | 1..1037 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:26 Download gff for
FMO01649.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31441-RA | 66..1102 | 1..1037 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:05 Download gff for
FMO01649.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31441-RA | 66..1102 | 1..1037 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:05 Download gff for
FMO01649.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11236351..11236488 | 1..140 | 97 | -> | Plus |
| 3R | 11236550..11237340 | 141..928 | 99 | -> | Plus |
| 3R | 11237400..11237499 | 929..1028 | 96 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:26 Download gff for
FMO01649.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7062073..7062210 | 1..140 | 97 | -> | Plus |
| arm_3R | 7062272..7063062 | 141..928 | 99 | -> | Plus |
| arm_3R | 7063122..7063221 | 929..1028 | 96 | == | Plus |
