FMO01650.5prime Sequence
1175 bp (972 high quality bases) assembled on 2008-04-11
> FMO01650.5prime
CAGTCGACATGGCGCCCGTGCAAGGATCCTACGACTACGACCTTATTGTG
ATTGGAGGCGGCTCAGCTGGCCTGGCCTGCGCCAAGGAGGCAGTCCTCAA
TGGAGCCCGTGTGGCCTGTCTGGATTTCGTTAAGCCCACGCCCACTCTGG
GCACCAAGTGGGGCGTTGGCGGCACCTGCGTGAACGTGGGCTGCATTCCC
AAGAAGCTGATGCACCAGGCCTCCCTTCTGGGCGAGGCTGTCCATGAGGC
GGCCGCCTACGGCTGGAACGTGGACGAAAAGATCAAGCCAGACTGGCACA
AGCTGGTGCAGTCCGTACAGAACCACATCAAGTCCGTCAACTGGGTGACC
CGTGTGGATCTGCGCGACAAGAAAGTGGAGTACATCAATGGACTGGGCTC
CTTCGTGGACTCGCACACACTGCTGGCCAAGCTGAAGAGCGGCGAGCGCA
CAATCACCGCCCAGACCTTCGTCATTGCCGTTGGCGGCCGACCACGTTAT
CCGGATATTCCCGGTGCTGTCGAGTATGGCATCACCAGCGATGATCTGTT
CAGTTTGGACCGCGAGCCCGGCAAGACCCTGGTGGTGGGAGCTGGCTACA
TTGGCTTGGAGTGCGCTGGATTCCTGAAGGGTCTCGGCTACGAGCCCACT
GTGATGGTGCGTTCTATTGTGCTGCGTGGCTTCGACCAGCAGATGGCCGA
GCTGGTGGCAGCCTCGATGGAGGAGCGTGGCATTCCCTTCCTCCGCAAGA
CGGTGCCGCTGTCCGTGGAAAAGCAGGATGATGGCAAGCTGCTCGTGAAG
TACAAGAACGTGGGAGACCGGCGAGGAGGCCGAGGTTGTTTACGACACCG
TTCTGTGGGCCATCGGCCGCAAAGGGTCTGGTGAACGATCTGAAACTGCC
CAATGCCGGCGTGACTGTGCAGAAGACAGATTCCAGTGGACTCCCAAGAA
GCTACCAATGTGCAAACATCTACCCTGCGGCGAATATCATCTTATGGCAG
CCAAAGCTGACCCCCGTCGCCGGTTTTGCCTGGCCGTTTGCTGGACCCGC
TGCTGTACGAAGATCTACCCAGCACATGGAACTACAGAAAGTGGGCCAAC
ACCGTTTTTACACCCTGGAATCGCCTCGCGCTCGCCTGAAGCAAGAGAAT
AGCGTCATAGACGATCTCGACACAC
FMO01650.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Trxr-1-RA | 2003 | CG2151-RA | 189..1295 | 9..1115 | 4920 | 97 | Plus |
| Trxr-1-RB | 2277 | CG2151-RB | 477..1569 | 23..1115 | 4850 | 97 | Plus |
| Trxr-1-RC | 2108 | CG2151-RC | 309..1400 | 24..1115 | 4845 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8246092..8246446 | 23..377 | 1760 | 99.7 | Plus |
| X | 23542271 | X | 8246808..8247291 | 598..1080 | 1700 | 92.8 | Plus |
| X | 23542271 | X | 8246510..8246736 | 371..597 | 1135 | 100 | Plus |
| 3L | 28110227 | 3L | 22550410..22550764 | 29..383 | 715 | 81.3 | Plus |
| 3L | 28110227 | 3L | 22550864..22551129 | 477..742 | 490 | 78.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:36:54 has no hits.
FMO01650.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:51:51 Download gff for
FMO01650.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2151-RA | 233..1322 | 9..1098 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:55 Download gff for
FMO01650.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trxr-1-RA | 189..1278 | 9..1098 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:12 Download gff for
FMO01650.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trxr-1-RA | 189..1278 | 9..1098 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:12 Download gff for
FMO01650.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8242716..8242731 | 9..24 | 100 | -> | Plus |
| X | 8246094..8246439 | 25..370 | 100 | -> | Plus |
| X | 8246510..8246736 | 371..597 | 100 | -> | Plus |
| X | 8246808..8247257 | 598..1046 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:55 Download gff for
FMO01650.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8136749..8136764 | 9..24 | 100 | -> | Plus |
| arm_X | 8140127..8140472 | 25..370 | 100 | -> | Plus |
| arm_X | 8140543..8140769 | 371..597 | 100 | -> | Plus |
| arm_X | 8140841..8141290 | 598..1046 | 95 | -> | Plus |
